pathwayresult-class: Class '"pathwayresult"'

In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Description

Class to store information about a pathway and associated genes.

Usage

#pathwayresult()

Objects from the Class

Objects can be created by calls of the form pathwayresult().

Fields

pathwayuri:

Object of class "character" the URI of the pathway from Reactome.

label:

Object of class "character" The human readable label of the pathway.

numgenes:

Object of class "numeric" A count of the number of genes for this pathway.

genes:

Object of class "vector" List of the genes associated with this pathway.

Methods

No methods defined with class "pathwayresult" in the signature.

Author(s)

James Malone

Examples

showClass("pathwayresult")

Example output

Loading required package: hash
hash-3.0.1 provided by Decision Patterns

Loading required package: SPARQL
Loading required package: XML
Loading required package: RCurl
Loading required package: bitops
Class "pathwayresult" [package "AtlasRDF"]

Slots:
                                                  
Name:  pathwayuri      label   numgenes      genes
Class:  character  character    numeric     vector

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.