getExperimentsByDescription: Search for experiments in Atlas based on a string, e.g....
In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Description Usage Arguments Value Author(s) Examples

View source: R/AtlasRDF.R

Find experiments in Atlas based on a search string such as a "liver" or "cancer". Returns the experiment IDs plus the text in which the search string was found.

1	getExperimentsByDescription(searchterm, limit = 0, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")

`searchterm`	The search term.
`limit`	Optional limit on number of returned results (default is everything)
`endpoint`	The location of the SPARQL endpoint - default value is live Atlas endpoint

`$experiment`	Atlas Experiment ID of matched experiment to search term'
`$description`	Description of experiment which matched term

James Malone, Simon Jupp

1 2	###get experiments which contain the word liver in the description getExperimentsByDescription("liver")

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.

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