getExperimentURIsForGeneId: Get experiment URIs which contain a gene specified by ENSEMBL...

In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Description

Get all of the experiment URIs which contain a gene, specified by an ENSEMBL ID, which has been reported as differentially expressed with said experiment.

Usage

    getExperimentURIsForGeneId(geneid, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")

Arguments

geneid	ENSEMBL gene ID
endpoint	The location of the SPARQL endpoint - default value is live Atlas endpoint

Value

List of experiment URIs for the specified gene. Note, the last part of the URI is the accession number used in Arrayexpress to identify an experiment.

Author(s)

James Malone, Simon Jupp

Examples

###get the experiment IDs for a gene ENSMUSG00000031314 (ENSEMBL ID)
#getExperimentURIsForGeneId("ENSMUSG00000031314")

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.