getPathwayUriFromName: Get pathway URI given a pathway name

In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Description

Given the name of a pathway find URI(s) that match this name

Usage

    getPathwayUriFromName(name, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")

Arguments

name	The textual name of the pathway to search for
endpoint	The location of the SPARQL endpoint - default value is live Atlas endpoint

Value

data frame containing slots

pathwayuri	The URI of the corresponding pathway
label	The textual human readable name of the pathway

Author(s)

James Malone, Simon Jupp

Examples

    ##get pathways which have the phrase 'ligand binding' included in their name
    #getPathwayUriFromName("ligand binding")

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.