Files in AtlasRDF
Gene Expression Atlas query and gene set enrichment package.
NAMESPACE
DESCRIPTION
inst/doc/AtlasRDF_vignette.Rnw
inst/doc/AtlasRDF_vignette.pdf
inst/doc/AtlasRDF_vignette.R
R/AtlasRDF.R
R/AllClasses.R
vignettes/AtlasRDF_vignette.Rnw
man/getTaxonURI.Rd
man/getExperimentIdsForGeneURI.Rd
man/getGenesForExperimentID.Rd
man/getPathwayForGeneId.Rd
man/getPathwaysFromGenesAndCondition.Rd
man/getGenesForPathwayURI.Rd
man/AtlasRDF-package.Rd
man/getLabel.Rd
man/excludeSubclasses.Rd
man/getExperimentURIsForGeneId.Rd
man/getOntologyMappings.Rd
man/calculateCountsForGeneLists.Rd
man/getRankedPathwaysForGeneIds.Rd
man/enrichmentresult-class.Rd
man/doFishersEnrichmentForGeneNames.Rd
man/searchForEFOTerms.Rd
man/getGeneListFromPubmedid.Rd
man/getPathwayUriFromName.Rd
man/getExperimentsByDescription.Rd
man/getSpeciesSpecificEnsemblGenesForExFactor.Rd
man/doFishersEnrichmentForEnsemblIds.Rd
man/vizPvalues.Rd
man/getAllEnsemblGenesForExFactor.Rd
man/drawHeatMapForAtlasExperiment.Rd
man/pathwayresult-class.Rd
man/doFishersEnrichment.Rd
man/getGenesForExperimentURI.Rd
man/factorbackground-class.Rd
man/getGeneUriFromName.Rd
man/transcription_pathway_enrichment.Rd
man/generef-class.Rd
man/getExFactorURIFromLabel.Rd
man/includeOnlySubclasses.Rd
man/orderEnrichmentResults.Rd
man/getGeneUriFromEnsemblId.Rd
build/vignette.rds
data/transcription_pathway_enrichment.RData
