getGenesForExperimentID: Get all of the genes reported in an experiment, speicifed by...
In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Description Usage Arguments Value Author(s) Examples

Get all of the gene as reported within an experiment. The experiment is specified as an Atlas experiment ID e.g. E-GEOD-3865

1	getGenesForExperimentID(experiment, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")

`experiment`	Atlas experiment ID.
`endpoint`	The location of the SPARQL endpoint - default value is live Atlas endpoint

data frame containg following elements

`expressionValue`	The summarised expression value for this gene
`dbXref`	The URI identifier for this gene
`pvalue`	The p-value representing differentially expression for this gene
`propertyValue`	The property value for which this gene was reported as differentially expressed

James Malone, Simon Jupp

###get genes for experiment ID E-MEXP-3739
#Can take several minutes to complete
#res <- getGenesForExperimentID("E-MEXP-3739")
###list first gene in the experiment
#res[1,]

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.