getGeneListFromPubmedid: Get gene lists in Atlas for a given pubmed id (assuming the...
In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.

Get differentially expressed genes reported in an experiment in Atlas for which a given pubmed id is linked (assuming the data is in Atlas)

1	getGeneListFromPubmedid(searchid, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")

`searchid`	PubMed ID to find data for
`endpoint`	SPARQL endpoint to query data from. Default value is the live Atlas SPARQL endpoint but this can be overidden.

List of genes for experiment (via PubMed ID)

James Malone, Simon Jupp

1 2	###get gene list for the publication with pubmed id 19668377 #getGeneListFromPubmedid("19668377")

AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.

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Package overview An introduction to the AtlasRDF-R package

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