getExperimentIdsForGeneURI: Get ArrayExpress experiment ID which contain a gene specified...
In AtlasRDF: Gene Expression Atlas query and gene set enrichment package.
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get all of the ArrayExpress experiment IDs which contain a gene, specified by a URI.
Usage
1
getExperimentIdsForGeneURI(geneuri, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")
Arguments
geneuri
Gene URI
endpoint
The location of the SPARQL endpoint - default value is live Atlas endpoint
Value
List of ArrayExpress experiment IDs for the specified gene.
Author(s)
James Malone, Simon Jupp
Examples
1
2
###get the experiment IDs for a gene ENSG00000142556 (ENSEMBL ID)
#getExperimentIdsForGeneURI("http://identifiers.org/ensembl/ENSG00000142556")
AtlasRDF documentation built on Nov. 17, 2017, 9:33 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Get all of the ArrayExpress experiment IDs which contain a gene, specified by a URI.
Usage
1 | getExperimentIdsForGeneURI(geneuri, endpoint = "http://www.ebi.ac.uk/rdf/services/atlas/sparql")
|
Arguments
geneuri |
Gene URI |
endpoint |
The location of the SPARQL endpoint - default value is live Atlas endpoint |
Value
List of ArrayExpress experiment IDs for the specified gene.
Author(s)
James Malone, Simon Jupp
Examples
1 2 | ###get the experiment IDs for a gene ENSG00000142556 (ENSEMBL ID)
#getExperimentIdsForGeneURI("http://identifiers.org/ensembl/ENSG00000142556")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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