MultiDataSet: Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet. MultiDataSet is designed for integrating multi omics data sets and MethylationSet to contain normalized methylation data. These package contains base classes for MEAL and rexposome packages.

AuthorCarlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonz<c3><a1>lez [aut]
Date of publicationNone
MaintainerCarlos Ruiz-Arenas <carlos.ruiz@isglobal.org>
Licensefile LICENSE
Version1.2.0

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Files in this package

MultiDataSet/DESCRIPTION
MultiDataSet/LICENSE
MultiDataSet/NAMESPACE
MultiDataSet/NEWS
MultiDataSet/R
MultiDataSet/R/0_AllClasses.R MultiDataSet/R/1_AllGenerics.R MultiDataSet/R/MethylationSet_Constructor.R MultiDataSet/R/MethylationSet_Initializer.R MultiDataSet/R/MethylationSet_SettersGetters.R MultiDataSet/R/MethylationSet_Validator.R MultiDataSet/R/MethylationSet_checkProbes.R MultiDataSet/R/MethylationSet_checkSamples.R MultiDataSet/R/MethylationSet_show.R MultiDataSet/R/MultiDataSet-add_eset.R MultiDataSet/R/MultiDataSet-add_genexp.R MultiDataSet/R/MultiDataSet-add_methy.R MultiDataSet/R/MultiDataSet-add_rse.R MultiDataSet/R/MultiDataSet-add_snps.R MultiDataSet/R/MultiDataSet-as_list.R MultiDataSet/R/MultiDataSet-assayData.R MultiDataSet/R/MultiDataSet-commonIds.R MultiDataSet/R/MultiDataSet-commonSamples.R MultiDataSet/R/MultiDataSet-constructor.R MultiDataSet/R/MultiDataSet-fData.R MultiDataSet/R/MultiDataSet-iclusterplus.R MultiDataSet/R/MultiDataSet-length.R MultiDataSet/R/MultiDataSet-mcia.R MultiDataSet/R/MultiDataSet-names.R MultiDataSet/R/MultiDataSet-rowRangesElements.R MultiDataSet/R/MultiDataSet-sampleNames.R MultiDataSet/R/MultiDataSet-show.R MultiDataSet/R/MultiDataSet.R MultiDataSet/R/MultiDataset-pData.R MultiDataSet/R/MultiDataset-rowRanges.R MultiDataSet/R/MultiDataset-subseting.R MultiDataSet/R/chrNumToChar.R MultiDataSet/R/downloadGEO.R MultiDataSet/R/prepareMethylationSet.R
MultiDataSet/build
MultiDataSet/build/vignette.rds
MultiDataSet/inst
MultiDataSet/inst/doc
MultiDataSet/inst/doc/MultiDataSet.R
MultiDataSet/inst/doc/MultiDataSet.Rmd
MultiDataSet/inst/doc/MultiDataSet.html
MultiDataSet/man
MultiDataSet/man/MethylationSet-class.Rd MultiDataSet/man/MultiDataSet-class.Rd MultiDataSet/man/MultiDataSet.Rd MultiDataSet/man/add_eset.Rd MultiDataSet/man/add_genexp.Rd MultiDataSet/man/add_methy.Rd MultiDataSet/man/add_rnaseq-methods.Rd MultiDataSet/man/add_rse.Rd MultiDataSet/man/add_snps.Rd MultiDataSet/man/checkProbes-methods.Rd MultiDataSet/man/checkSamples-methods.Rd MultiDataSet/man/chrNumToChar.Rd MultiDataSet/man/commonIds.Rd MultiDataSet/man/commonSamples.Rd MultiDataSet/man/getMs-methods.Rd MultiDataSet/man/prepareMethylationSet.Rd MultiDataSet/man/rowRangesElements.Rd MultiDataSet/man/w_iclusterplus.Rd MultiDataSet/man/w_mcia.Rd
MultiDataSet/tests
MultiDataSet/tests/testthat
MultiDataSet/tests/testthat.R
MultiDataSet/tests/testthat/test_00createSet.R
MultiDataSet/tests/testthat/test_01addeSet.R
MultiDataSet/tests/testthat/test_02addrse.R
MultiDataSet/tests/testthat/test_03subsetting.R
MultiDataSet/vignettes
MultiDataSet/vignettes/MultiDataSet.Rmd

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