XVector: Representation and manpulation of external sequences

Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).

Author
Hervé Pagès and Patrick Aboyoun
Date of publication
None
Maintainer
Hervé Pagès <hpages@fredhutch.org>
License
Artistic-2.0
Version
0.14.0

View on Bioconductor

Man pages

compact-methods
Object compaction
intra-range-methods
Intra range transformations of an XVectorList object
OnDiskRaw-class
OnDiskRaw objects
reverse-methods
Reverse an XVector or XVectorList object
slice-methods
Slice an XInteger or XDouble object
updateObject-methods
Update an object of a class defined in the XVector package to...
view-summarization-methods
Summarize views on an XInteger or XDouble object
XDoubleViews-class
The XDoubleViews class
XIntegerViews-class
The XIntegerViews class
XRawList-class
XRawList objects
XRawList-comparison
Comparing and ordering the list elements of XRawList objects
XVector-class
XVector objects
XVector-internals
XVector internals
XVectorList-class
XVectorList objects

Files in this package

XVector/DESCRIPTION
XVector/NAMESPACE
XVector/R
XVector/R/OnDiskRaw-class.R
XVector/R/RdaCollection-class.R
XVector/R/SharedDouble-class.R
XVector/R/SharedInteger-class.R
XVector/R/SharedRaw-class.R
XVector/R/SharedVector-class.R
XVector/R/XDouble-class.R
XVector/R/XDoubleViews-class.R
XVector/R/XInteger-class.R
XVector/R/XIntegerViews-class.R
XVector/R/XRaw-class.R
XVector/R/XRawList-class.R
XVector/R/XRawList-comparison.R
XVector/R/XVector-class.R
XVector/R/XVectorList-class.R
XVector/R/compact-methods.R
XVector/R/intra-range-methods.R
XVector/R/io-utils.R
XVector/R/reverse-methods.R
XVector/R/slice-methods.R
XVector/R/updateObject-methods.R
XVector/R/view-summarization-methods.R
XVector/R/zzz.R
XVector/TODO
XVector/inst
XVector/inst/include
XVector/inst/include/XVector_defines.h
XVector/inst/include/XVector_interface.h
XVector/inst/include/_XVector_stubs.c
XVector/inst/unitTests
XVector/inst/unitTests/test_slice-methods.R
XVector/inst/unitTests/test_view-summarization-methods.R
XVector/man
XVector/man/OnDiskRaw-class.Rd
XVector/man/XDoubleViews-class.Rd
XVector/man/XIntegerViews-class.Rd
XVector/man/XRawList-class.Rd
XVector/man/XRawList-comparison.Rd
XVector/man/XVector-class.Rd
XVector/man/XVector-internals.Rd
XVector/man/XVectorList-class.Rd
XVector/man/compact-methods.Rd
XVector/man/intra-range-methods.Rd
XVector/man/reverse-methods.Rd
XVector/man/slice-methods.Rd
XVector/man/updateObject-methods.Rd
XVector/man/view-summarization-methods.Rd
XVector/src
XVector/src/IRanges_stubs.c
XVector/src/Makevars
XVector/src/Makevars.win
XVector/src/Ocopy_byteblocks.c
XVector/src/R_init_XVector.c
XVector/src/S4Vectors_stubs.c
XVector/src/SharedDouble_class.c
XVector/src/SharedInteger_class.c
XVector/src/SharedRaw_class.c
XVector/src/SharedVector_class.c
XVector/src/XRawList_comparison.c
XVector/src/XVector.h
XVector/src/XVectorList_class.c
XVector/src/XVector_class.c
XVector/src/io_utils.c
XVector/src/slice_methods.c
XVector/src/vector_copy.c
XVector/src/view_summarization_methods.c
XVector/tests
XVector/tests/run_unitTests.R