XVector: Representation and manpulation of external sequences

Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).

AuthorHervé Pagès and Patrick Aboyoun
Date of publicationNone
MaintainerHervé Pagès <hpages@fredhutch.org>
LicenseArtistic-2.0
Version0.14.0

View on Bioconductor

Functions

as.data.frame,GroupedIRanges-method Man page
as.integer,SharedInteger-method Man page
as.integer,SharedRaw-method Man page
as.integer,XInteger-method Man page
as.integer,XRaw-method Man page
as.numeric,SharedDouble-method Man page
as.numeric,SharedVector-method Man page
as.numeric,XDouble-method Man page
as.numeric,XVector-method Man page
as.raw,XRaw-method Man page
as.vector,XDouble-method Man page
as.vector,XInteger-method Man page
as.vector,XRaw-method Man page
c,GroupedIRanges-method Man page
class:GroupedIRanges Man page
class:OnDiskRaw Man page
class:SharedDouble Man page
class:SharedInteger Man page
class:SharedRaw Man page
class:SharedRaw_Pool Man page
class:SharedVector Man page
class:SharedVector_Pool Man page
class:XDouble Man page
class:XDoubleViews Man page
class:XInteger Man page
class:XIntegerViews Man page
class:XRaw Man page
class:XRawList Man page
class:XVector Man page
class:XVectorList Man page
coerce,integer,XVector-method Man page
coerce,numeric,XDouble-method Man page
coerce,numeric,XInteger-method Man page
coerce,numeric,XRaw-method Man page
coerce,numeric,XVector-method Man page
coerce,raw,XRaw-method Man page
coerce,raw,XVector-method Man page
coerce,SharedVector,SharedVector_Pool-method Man page
compact Man page
compact,ANY-method Man page
compact,XVectorList-method Man page
compact,XVector-method Man page
c,SharedVector_Pool-method Man page
c,XVectorList-method Man page
c,XVector-method Man page
duplicated.XRawList Man page
duplicated,XRawList-method Man page
elementNROWS,XVectorList-method Man page
endoapply,XVectorList-method Man page
GroupedIRanges Man page
GroupedIRanges-class Man page
==,integer,XIntegerViews-method Man page
intra-range-methods Man page
is.unsorted,XRawList-method Man page
length,OnDiskRaw-method Man page
length,SharedVector-method Man page
length,SharedVector_Pool-method Man page
length,XVectorList-method Man page
length,XVector-method Man page
match,XRawList,XRawList-method Man page
names<-,XVectorList-method Man page
names,XVectorList-method Man page
narrow Man page
narrow,XVectorList-method Man page
==,numeric,XDoubleViews-method Man page
OnDiskRaw Man page
OnDiskRaw-class Man page
order,XRawList-method Man page
pcompare Man page
pcompare,XRawList,XRawList-method Man page
rank,XRawList-method Man page
reverse-methods Man page
reverse,SharedRaw-method Man page
reverse,SharedVector_Pool-method Man page
reverse,XVectorList-method Man page
reverse,XVector-method Man page
rev,XVector-method Man page
SharedDouble Man page
SharedDouble-class Man page
SharedInteger Man page
SharedInteger-class Man page
SharedRaw Man page
SharedRaw-class Man page
SharedRaw_Pool Man page
SharedRaw_Pool-class Man page
[[<-,SharedRaw_Pool-method Man page
[[,SharedRaw_Pool-method Man page
SharedRaw.read Man page
SharedRaw.readComplexes Man page
SharedRaw.readInts Man page
SharedRaw.write Man page
SharedRaw.writeInts Man page
SharedVector Man page
SharedVector-class Man page
SharedVector.compare Man page
SharedVector.copy Man page
SharedVector_Pool Man page
SharedVector_Pool-class Man page
[,SharedVector_Pool-method Man page
==,SharedVector,SharedVector-method Man page
!=,SharedVector,SharedVector-method Man page
showAsCell,XVectorList-method Man page
show,externalptr-method Man page
show,GroupedIRanges-method Man page
show,SharedVector-method Man page
show,SharedVector_Pool-method Man page
show,XDouble-method Man page
show,XDoubleViews-method Man page
show,XIntegerViews-method Man page
show,XVector-method Man page
slice,integer-method Man page
slice-methods Man page
slice,numeric-method Man page
slice,XDouble-method Man page
slice,XInteger-method Man page
subseq Man page
subseq<- Man page
subseq,XVectorList-method Man page
subseq<-,XVector-method Man page
subseq,XVector-method Man page
threebands Man page
threebands,XVectorList-method Man page
toString,SharedRaw-method Man page
unlist_list_of_XVectorList Man page
unsplit_list_of_XVectorList Man page
updateObject-methods Man page
updateObject,XIntegerViews-method Man page
updateObject,XVector-method Man page
viewMaxs,XDoubleViews-method Man page
viewMaxs,XIntegerViews-method Man page
viewMeans,XDoubleViews-method Man page
viewMeans,XIntegerViews-method Man page
viewMins,XDoubleViews-method Man page
viewMins,XIntegerViews-method Man page
Views,integer-method Man page
Views,numeric-method Man page
view-summarization-methods Man page
viewSums,XDoubleViews-method Man page
viewSums,XIntegerViews-method Man page
Views,XDouble-method Man page
Views,XInteger-method Man page
viewWhichMaxs,XDoubleViews-method Man page
viewWhichMaxs,XIntegerViews-method Man page
viewWhichMins,XDoubleViews-method Man page
viewWhichMins,XIntegerViews-method Man page
width,SharedVector_Pool-method Man page
width,XVectorList-method Man page
XDouble Man page
XDouble-class Man page
XDoubleViews Man page
XDoubleViews-class Man page
==,XDoubleViews,numeric-method Man page
==,XDoubleViews,XDouble-method Man page
==,XDoubleViews,XDoubleViews-method Man page
==,XDouble,XDoubleViews-method Man page
XInteger Man page
XInteger-class Man page
XIntegerViews Man page
XIntegerViews-class Man page
==,XIntegerViews,integer-method Man page
==,XIntegerViews,XInteger-method Man page
==,XIntegerViews,XIntegerViews-method Man page
==,XInteger,XIntegerViews-method Man page
XNumeric Man page
XRaw Man page
XRaw-class Man page
XRawList Man page
XRawList-class Man page
XRawList-comparison Man page
<=,XRawList,XRawList-method Man page
==,XRawList,XRawList-method Man page
xvcopy Man page
xvcopy,SharedVector-method Man page
xvcopy,SharedVector_Pool-method Man page
xvcopy,XRawList-method Man page
xvcopy,XVector-method Man page
XVector Man page
XVector-class Man page
XVectorList Man page
XVectorList-class Man page
[,XVectorList-method Man page
[[<-,XVectorList-method Man page
[[,XVectorList-method Man page
[,XVector-method Man page
==,XVector,XVector-method Man page

Files

XVector/DESCRIPTION
XVector/NAMESPACE
XVector/R
XVector/R/OnDiskRaw-class.R XVector/R/RdaCollection-class.R XVector/R/SharedDouble-class.R XVector/R/SharedInteger-class.R XVector/R/SharedRaw-class.R XVector/R/SharedVector-class.R XVector/R/XDouble-class.R XVector/R/XDoubleViews-class.R XVector/R/XInteger-class.R XVector/R/XIntegerViews-class.R XVector/R/XRaw-class.R XVector/R/XRawList-class.R XVector/R/XRawList-comparison.R XVector/R/XVector-class.R XVector/R/XVectorList-class.R XVector/R/compact-methods.R XVector/R/intra-range-methods.R XVector/R/io-utils.R XVector/R/reverse-methods.R XVector/R/slice-methods.R XVector/R/updateObject-methods.R XVector/R/view-summarization-methods.R XVector/R/zzz.R
XVector/TODO
XVector/inst
XVector/inst/include
XVector/inst/include/XVector_defines.h
XVector/inst/include/XVector_interface.h
XVector/inst/include/_XVector_stubs.c
XVector/inst/unitTests
XVector/inst/unitTests/test_slice-methods.R
XVector/inst/unitTests/test_view-summarization-methods.R
XVector/man
XVector/man/OnDiskRaw-class.Rd XVector/man/XDoubleViews-class.Rd XVector/man/XIntegerViews-class.Rd XVector/man/XRawList-class.Rd XVector/man/XRawList-comparison.Rd XVector/man/XVector-class.Rd XVector/man/XVector-internals.Rd XVector/man/XVectorList-class.Rd XVector/man/compact-methods.Rd XVector/man/intra-range-methods.Rd XVector/man/reverse-methods.Rd XVector/man/slice-methods.Rd XVector/man/updateObject-methods.Rd XVector/man/view-summarization-methods.Rd
XVector/src
XVector/src/IRanges_stubs.c
XVector/src/Makevars
XVector/src/Makevars.win
XVector/src/Ocopy_byteblocks.c
XVector/src/R_init_XVector.c
XVector/src/S4Vectors_stubs.c
XVector/src/SharedDouble_class.c
XVector/src/SharedInteger_class.c
XVector/src/SharedRaw_class.c
XVector/src/SharedVector_class.c
XVector/src/XRawList_comparison.c
XVector/src/XVector.h
XVector/src/XVectorList_class.c
XVector/src/XVector_class.c
XVector/src/io_utils.c
XVector/src/slice_methods.c
XVector/src/vector_copy.c
XVector/src/view_summarization_methods.c
XVector/tests
XVector/tests/run_unitTests.R

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