SingleCellExperiment: S4 Classes for Single Cell Data

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

Package details

AuthorAaron Lun [aut, cph], Davide Risso [aut, cre, cph], Keegan Korthauer [ctb], Kevin Rue-Albrecht [ctb]
Bioconductor views DataImport DataRepresentation ImmunoOncology Infrastructure SingleCell
MaintainerDavide Risso <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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SingleCellExperiment documentation built on Nov. 8, 2020, 7:51 p.m.