defunct: Defunct methods

Description Named size factors Spike-ins Author(s)


Defunct methods in the SingleCellExperiment package.

Named size factors

The class now only supports one set of size factors, accessible via sizeFactors. This represents a simplification of the class and removes a difficult part of the API (that had to deal with both NULL and strings to specify the size factor set of interest).


It is recommended to handle spike-ins and other “alternative” features via altExps.


Aaron Lun

SingleCellExperiment documentation built on Nov. 8, 2020, 7:51 p.m.