SpatialExperiment: S4 Class for Spatial Experiments handling

Defines S4 classes for storing data for spatial experiments. Main examples are reported by using seqFISH and 10x-Visium Spatial Gene Expression data. This includes specialized methods for storing, retrieving spatial coordinates, 10x dedicated parameters and their handling.

Package details

AuthorDario Righelli [aut, cre], Davide Risso [aut]
Bioconductor views DataImport DataRepresentation ImmunoOncology Infrastructure SingleCell
MaintainerDario Righelli <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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SpatialExperiment documentation built on Nov. 8, 2020, 7:35 p.m.