BufferedMatrix: A matrix data storage object held in temporary files

A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.

AuthorBenjamin Milo Bolstad <bmb@bmbolstad.com>
Date of publicationNone
MaintainerBenjamin Milo Bolstad <bmb@bmbolstad.com>
LicenseLGPL (>= 2)
Version1.38.0
https://github.com/bmbolstad/BufferedMatrix

View on Bioconductor

Functions

AddColumn Man page
AddColumn,BufferedMatrix-method Man page
as.BufferedMatrix Man page
as.matrix,BufferedMatrix-method Man page
buffer.dim Man page
buffer.dim,BufferedMatrix-method Man page
BufferedMatrix-class Man page
[<-,BufferedMatrix-method Man page
[,BufferedMatrix-method Man page
coerce,BufferedMatrix,matrix-method Man page
coerce,matrix,BufferedMatrix-method Man page
colApply Man page
colApply,BufferedMatrix-method Man page
colMax Man page
colMax,BufferedMatrix-method Man page
colMeans Man page
colMeans,BufferedMatrix-method Man page
colMedians Man page
colMedians,BufferedMatrix-method Man page
colMin Man page
colMin,BufferedMatrix-method Man page
ColMode Man page
ColMode,BufferedMatrix-method Man page
colnames<-,BufferedMatrix-method Man page
colnames,BufferedMatrix-method Man page
colRanges Man page
colRanges,BufferedMatrix-method Man page
colSd Man page
colSd,BufferedMatrix-method Man page
colSums Man page
colSums,BufferedMatrix-method Man page
colVars Man page
colVars,BufferedMatrix-method Man page
createBufferedMatrix Man page
dim,BufferedMatrix-method Man page
dimnames<-,BufferedMatrix-method Man page
dimnames,BufferedMatrix-method Man page
directory Man page
directory,BufferedMatrix-method Man page
disk.usage Man page
disk.usage,BufferedMatrix-method Man page
duplicate Man page
duplicate,BufferedMatrix-method Man page
ewApply Man page
ewApply,BufferedMatrix-method Man page
exp,BufferedMatrix-method Man page
filenames Man page
filenames,BufferedMatrix-method Man page
is.BufferedMatrix Man page
is.ColMode Man page
is.ColMode,BufferedMatrix-method Man page
is.ReadOnlyMode Man page
is.ReadOnlyMode,BufferedMatrix-method Man page
is.RowMode Man page
is.RowMode,BufferedMatrix-method Man page
log,BufferedMatrix-method Man page
Max Man page
Max,BufferedMatrix-method Man page
mean,BufferedMatrix-method Man page
memory.usage Man page
memory.usage,BufferedMatrix-method Man page
Min Man page
Min,BufferedMatrix-method Man page
MoveStorageDirectory Man page
MoveStorageDirectory,BufferedMatrix-method Man page
ncol,BufferedMatrix-method Man page
nrow,BufferedMatrix-method Man page
pow Man page
pow,BufferedMatrix-method Man page
prefix Man page
prefix,BufferedMatrix-method Man page
ReadOnlyMode Man page
ReadOnlyMode,BufferedMatrix-method Man page
rowApply Man page
rowApply,BufferedMatrix-method Man page
rowMax Man page
rowMax,BufferedMatrix-method Man page
rowMeans Man page
rowMeans,BufferedMatrix-method Man page
rowMedians Man page
rowMedians,BufferedMatrix-method Man page
rowMin Man page
rowMin,BufferedMatrix-method Man page
RowMode Man page
RowMode,BufferedMatrix-method Man page
rownames<-,BufferedMatrix-method Man page
rownames,BufferedMatrix-method Man page
rowSd Man page
rowSd,BufferedMatrix-method Man page
rowSums Man page
rowSums,BufferedMatrix-method Man page
rowVars Man page
rowVars,BufferedMatrix-method Man page
Sd Man page
Sd,BufferedMatrix-method Man page
set.buffer.dim Man page
set.buffer.dim,BufferedMatrix-method Man page
show,BufferedMatrix-method Man page
sqrt,BufferedMatrix-method Man page
subBufferedMatrix Man page
subBufferedMatrix,BufferedMatrix-method Man page
Sum Man page
Sum,BufferedMatrix-method Man page
Var Man page
Var,BufferedMatrix-method Man page

Files

BufferedMatrix/CHANGELOG.txt
BufferedMatrix/DESCRIPTION
BufferedMatrix/NAMESPACE
BufferedMatrix/R
BufferedMatrix/R/BufferedMatrix.R BufferedMatrix/R/allGenerics.R BufferedMatrix/R/as.BufferedMatrix.R BufferedMatrix/R/createBufferedMatrix.R BufferedMatrix/R/init.R
BufferedMatrix/build
BufferedMatrix/build/vignette.rds
BufferedMatrix/inst
BufferedMatrix/inst/doc
BufferedMatrix/inst/doc/BufferedMatrix.R
BufferedMatrix/inst/doc/BufferedMatrix.Rnw
BufferedMatrix/inst/doc/BufferedMatrix.pdf
BufferedMatrix/inst/include
BufferedMatrix/inst/include/doubleBufferedMatrix.h
BufferedMatrix/inst/include/doubleBufferedMatrix_stubs.c
BufferedMatrix/man
BufferedMatrix/man/BufferedMatrix-class.Rd BufferedMatrix/man/as.BufferedMatrix.Rd BufferedMatrix/man/createBufferedMatrix.Rd
BufferedMatrix/src
BufferedMatrix/src/RBufferedMatrix.c
BufferedMatrix/src/doubleBufferedMatrix.c
BufferedMatrix/src/doubleBufferedMatrix.h
BufferedMatrix/src/doubleBufferedMatrix_C_tests.c
BufferedMatrix/src/init_package.c
BufferedMatrix/tests
BufferedMatrix/tests/Rcodetesting.R
BufferedMatrix/tests/c_code_level_tests.R
BufferedMatrix/tests/objectTesting.R
BufferedMatrix/tests/rawCalltesting.R
BufferedMatrix/vignettes
BufferedMatrix/vignettes/BufferedMatrix.Rnw
BufferedMatrix/vignettes/BufferedMatrixPicture1.pdf
BufferedMatrix/vignettes/BufferedMatrixPicture2.pdf
BufferedMatrix/vignettes/BufferedMatrixPicture3.pdf
BufferedMatrix/vignettes/BufferedMatrixPicture4.pdf
BufferedMatrix/vignettes/BufferedMatrixPicture5.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.