BufferedMatrix: A matrix data storage object held in temporary files

A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BufferedMatrix")
AuthorBenjamin Milo Bolstad <bmb@bmbolstad.com>
Bioconductor views Infrastructure
Date of publicationNone
MaintainerBenjamin Milo Bolstad <bmb@bmbolstad.com>
LicenseLGPL (>= 2)
Version1.38.0
https://github.com/bmbolstad/BufferedMatrix

View on Bioconductor

Functions

AddColumn Man page
AddColumn,BufferedMatrix-method Man page
as.BufferedMatrix Man page
as.matrix,BufferedMatrix-method Man page
buffer.dim Man page
buffer.dim,BufferedMatrix-method Man page
BufferedMatrix-class Man page
[<-,BufferedMatrix-method Man page
[,BufferedMatrix-method Man page
coerce,BufferedMatrix,matrix-method Man page
coerce,matrix,BufferedMatrix-method Man page
colApply Man page
colApply,BufferedMatrix-method Man page
colMax Man page
colMax,BufferedMatrix-method Man page
colMeans Man page
colMeans,BufferedMatrix-method Man page
colMedians Man page
colMedians,BufferedMatrix-method Man page
colMin Man page
colMin,BufferedMatrix-method Man page
ColMode Man page
ColMode,BufferedMatrix-method Man page
colnames<-,BufferedMatrix-method Man page
colnames,BufferedMatrix-method Man page
colRanges Man page
colRanges,BufferedMatrix-method Man page
colSd Man page
colSd,BufferedMatrix-method Man page
colSums Man page
colSums,BufferedMatrix-method Man page
colVars Man page
colVars,BufferedMatrix-method Man page
createBufferedMatrix Man page
dim,BufferedMatrix-method Man page
dimnames<-,BufferedMatrix-method Man page
dimnames,BufferedMatrix-method Man page
directory Man page
directory,BufferedMatrix-method Man page
disk.usage Man page
disk.usage,BufferedMatrix-method Man page
duplicate Man page
duplicate,BufferedMatrix-method Man page
ewApply Man page
ewApply,BufferedMatrix-method Man page
exp,BufferedMatrix-method Man page
filenames Man page
filenames,BufferedMatrix-method Man page
is.BufferedMatrix Man page
is.ColMode Man page
is.ColMode,BufferedMatrix-method Man page
is.ReadOnlyMode Man page
is.ReadOnlyMode,BufferedMatrix-method Man page
is.RowMode Man page
is.RowMode,BufferedMatrix-method Man page
log,BufferedMatrix-method Man page
Max Man page
Max,BufferedMatrix-method Man page
mean,BufferedMatrix-method Man page
memory.usage Man page
memory.usage,BufferedMatrix-method Man page
Min Man page
Min,BufferedMatrix-method Man page
MoveStorageDirectory Man page
MoveStorageDirectory,BufferedMatrix-method Man page
ncol,BufferedMatrix-method Man page
nrow,BufferedMatrix-method Man page
pow Man page
pow,BufferedMatrix-method Man page
prefix Man page
prefix,BufferedMatrix-method Man page
ReadOnlyMode Man page
ReadOnlyMode,BufferedMatrix-method Man page
rowApply Man page
rowApply,BufferedMatrix-method Man page
rowMax Man page
rowMax,BufferedMatrix-method Man page
rowMeans Man page
rowMeans,BufferedMatrix-method Man page
rowMedians Man page
rowMedians,BufferedMatrix-method Man page
rowMin Man page
rowMin,BufferedMatrix-method Man page
RowMode Man page
RowMode,BufferedMatrix-method Man page
rownames<-,BufferedMatrix-method Man page
rownames,BufferedMatrix-method Man page
rowSd Man page
rowSd,BufferedMatrix-method Man page
rowSums Man page
rowSums,BufferedMatrix-method Man page
rowVars Man page
rowVars,BufferedMatrix-method Man page
Sd Man page
Sd,BufferedMatrix-method Man page
set.buffer.dim Man page
set.buffer.dim,BufferedMatrix-method Man page
show,BufferedMatrix-method Man page
sqrt,BufferedMatrix-method Man page
subBufferedMatrix Man page
subBufferedMatrix,BufferedMatrix-method Man page
Sum Man page
Sum,BufferedMatrix-method Man page
Var Man page
Var,BufferedMatrix-method Man page

Files

CHANGELOG.txt
DESCRIPTION
NAMESPACE
R
R/BufferedMatrix.R R/allGenerics.R R/as.BufferedMatrix.R R/createBufferedMatrix.R R/init.R
build
build/vignette.rds
inst
inst/doc
inst/doc/BufferedMatrix.R
inst/doc/BufferedMatrix.Rnw
inst/doc/BufferedMatrix.pdf
inst/include
inst/include/doubleBufferedMatrix.h
inst/include/doubleBufferedMatrix_stubs.c
man
man/BufferedMatrix-class.Rd man/as.BufferedMatrix.Rd man/createBufferedMatrix.Rd
src
src/RBufferedMatrix.c
src/doubleBufferedMatrix.c
src/doubleBufferedMatrix.h
src/doubleBufferedMatrix_C_tests.c
src/init_package.c
tests
tests/Rcodetesting.R tests/c_code_level_tests.R tests/objectTesting.R tests/rawCalltesting.R
vignettes
vignettes/BufferedMatrix.Rnw
vignettes/BufferedMatrixPicture1.pdf
vignettes/BufferedMatrixPicture2.pdf
vignettes/BufferedMatrixPicture3.pdf
vignettes/BufferedMatrixPicture4.pdf
vignettes/BufferedMatrixPicture5.pdf

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