CGHbase: CGHbase: Base functions and classes for arrayCGH data analysis.

Contains functions and classes that are needed by arrayCGH packages.

AuthorSjoerd Vosse, Mark van de Wiel
Date of publicationNone
MaintainerMark van de Wiel <mark.vdwiel@vumc.nl>
LicenseGPL
Version1.34.0
https://github.com/tgac-vumc/CGHbase

View on Bioconductor

Functions

avedist Man page
avedist,cghRegions-method Man page
bpend Man page
bpend,cghCall-method Man page
bpend,cghRaw-method Man page
bpend,cghRegions-method Man page
bpend,cghSeg-method Man page
bpstart Man page
bpstart,cghCall-method Man page
bpstart,cghRaw-method Man page
bpstart,cghRegions-method Man page
bpstart,cghSeg-method Man page
calls Man page
calls<- Man page
calls<-,cghCall,matrix-method Man page
calls,cghCall-method Man page
CGHbase Man page
CGHbase-package Man page
cghCall Man page
cghCall-class Man page
cghRaw Man page
cghRaw-class Man page
cghRegions Man page
cghRegions-class Man page
cghSeg Man page
cghSeg-class Man page
chromosomes Man page
chromosomes,cghCall-method Man page
chromosomes,cghRaw-method Man page
chromosomes,cghRegions-method Man page
chromosomes,cghSeg-method Man page
class:cghCall Man page
class:cghRaw Man page
class:cghRegions Man page
class:cghSeg Man page
copynumber Man page
copynumber<- Man page
copynumber<-,cghCall,matrix-method Man page
copynumber,cghCall-method Man page
copynumber<-,cghRaw,matrix-method Man page
copynumber,cghRaw-method Man page
copynumber<-,cghSeg,matrix-method Man page
copynumber,cghSeg-method Man page
frequencyPlot Man page
frequencyPlotCalls Man page
frequencyPlotCalls,cghCall,missing-method Man page
frequencyPlot,cghRegions,missing-method Man page
initialize,cghCall-method Man page
initialize,cghRaw-method Man page
initialize,cghRegions-method Man page
initialize,cghSeg-method Man page
make_cghRaw Man page
nclone Man page
nclone,cghRegions-method Man page
plot.cghCall Man page
plot,cghCall,missing-method Man page
plot.cghRaw Man page
plot,cghRaw,missing-method Man page
plot.cghRegions Man page
plot.cghRegions,cghRegions,missing-method Man page
plot.cghSeg Man page
plot,cghSeg,missing-method Man page
plot.summary,cghCall,missing-method Man page
probamp Man page
probamp<- Man page
probamp<-,cghCall,matrix-method Man page
probamp,cghCall-method Man page
probdloss Man page
probdloss<- Man page
probdloss<-,cghCall,matrix-method Man page
probdloss,cghCall-method Man page
probgain Man page
probgain<- Man page
probgain<-,cghCall,matrix-method Man page
probgain,cghCall-method Man page
probloss Man page
probloss<- Man page
probloss<-,cghCall,matrix-method Man page
probloss,cghCall-method Man page
probnorm Man page
probnorm<- Man page
probnorm<-,cghCall,matrix-method Man page
probnorm,cghCall-method Man page
regions Man page
regions<- Man page
regions<-,cghRegions,matrix-method Man page
regions,cghRegions-method Man page
segmented Man page
segmented<- Man page
segmented<-,cghCall,matrix-method Man page
segmented,cghCall-method Man page
segmented<-,cghSeg,matrix-method Man page
segmented,cghSeg-method Man page
summaryPlot Man page
Wilting Man page
WiltingCalled Man page
WiltingNorm Man page
WiltingRaw Man page
WiltingRegions Man page
WiltingSeg Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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