Retrieve copynumber data from cgh objects.

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Description

These generic functions access the copynumber values of assay data stored in an object derived from the cghRaw-class, cghSeg-class or cghCall-class.

Usage

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copynumber(object)
copynumber(object) <- value
segmented(object)
segmented(object) <- value
calls(object)
calls(object) <- value

Arguments

object

Object derived from class cghRaw, cghSeg, or cghCall

value

Matrix with rows representing features and columns samples.

Value

copynumber returns a matrix of copynumber values;

Author(s)

Sjoerd Vosse

See Also

cghRaw-class, cghSeg-class, cghCall-class

Examples

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