chromosomes: Retrieve feature position data from cgh objects.
In CGHbase: CGHbase: Base functions and classes for arrayCGH data analysis.

Description Usage Arguments Value Author(s) See Also

These generic functions access the position data stored in the featureData of an object derived from the cghRaw-class, cghSeg-class or cghCall-class.

1
2
3

chromosomes(object)
bpstart(object)
bpend(object)

object

Object derived from class cghRaw, cghSeg, or cghCall

chromosomes returns a vector of chromosome numbers; bpstart returns a vector of basepair start positions; bpend returns a vector of basepair end positions;

Sjoerd Vosse

cghRaw-class, cghSeg-class, cghCall-class

CGHbase documentation built on Nov. 8, 2020, 5:04 p.m.