genbankr: Parsing GenBank files into semantically useful objects

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Reads Genbank files.

Author
Gabriel Becker [aut, cre], Michael Lawrence [aut]
Date of publication
None
Maintainer
Gabriel Becker <becker.gabriel@gene.com>
License
Artistic-2.0
Version
1.2.0

View on Bioconductor

Man pages

api-methods
Annotation extraction api
GBAccession
GBAccession ID class
gbk-api
genbankr specific api
gbkfile
GenBank File
GenBank-classes
GenBank data objects
import
Import genbank file
intergenic
Extract intergenic regions from processed GenBank annotations
make_gbobjs
GenBank object constructors
otherFeatures
Retrieve 'other' features
parseGenBank
Parse raw genbank file content
readGenBank
Read a GenBank File
txdb
Create a TxDb from a GenBank record
variants
Retrieve variantion features

Files in this package

genbankr/CONDUCT.md
genbankr/DESCRIPTION
genbankr/NAMESPACE
genbankr/NEWS
genbankr/R
genbankr/R/allClasses.R
genbankr/R/api-methods.R
genbankr/R/genbankReader.R
genbankr/R/txdb.R
genbankr/README.md
genbankr/inst
genbankr/inst/examplefiles
genbankr/inst/examplefiles/feat_del.txt
genbankr/inst/examplefiles/test1.gbk
genbankr/inst/sample.gbk
genbankr/inst/unitTests
genbankr/inst/unitTests/ABD64816.1.gpt
genbankr/inst/unitTests/compjoin.gbk
genbankr/inst/unitTests/locus_tag.gbk
genbankr/inst/unitTests/multval.gbk
genbankr/inst/unitTests/multval2.gbk
genbankr/inst/unitTests/partial.gbk
genbankr/inst/unitTests/test_set1.R
genbankr/inst/unitTests/vars.gbk
genbankr/man
genbankr/man/GBAccession.Rd
genbankr/man/GenBank-classes.Rd
genbankr/man/api-methods.Rd
genbankr/man/gbk-api.Rd
genbankr/man/gbkfile.Rd
genbankr/man/import.Rd
genbankr/man/intergenic.Rd
genbankr/man/make_gbobjs.Rd
genbankr/man/otherFeatures.Rd
genbankr/man/parseGenBank.Rd
genbankr/man/readGenBank.Rd
genbankr/man/txdb.Rd
genbankr/man/variants.Rd
genbankr/tests
genbankr/tests/runTests.R
genbankr/vignettes
genbankr/vignettes/genbankr.Rmd