preprocessCore: A collection of pre-processing functions

A library of core preprocessing routines

AuthorBenjamin Milo Bolstad <bmb@bmbolstad.com>
Date of publicationNone
MaintainerBenjamin Milo Bolstad <bmb@bmbolstad.com>
LicenseLGPL (>= 2)
Version1.36.0
https://github.com/bmbolstad/preprocessCore

View on Bioconductor

Functions

colSummarizeAvg Man page
colSummarizeAvgLog Man page
colSummarizeBiweight Man page
colSummarizeBiweightLog Man page
colSummarizeLogAvg Man page
colSummarizeLogMedian Man page
colSummarizeMedian Man page
colSummarizeMedianLog Man page
colSummarizeMedianpolish Man page
colSummarizeMedianpolishLog Man page
convert.group.labels Man page
normalize.AffyBatch.quantiles.robust Man page
normalize.quantiles Man page
normalize.quantiles.determine.target Man page
normalize.quantiles.in.blocks Man page
normalize.quantiles.robust Man page
normalize.quantiles.use.target Man page
rcModelMedianPolish Man page
rcModelPLM Man page
rcModelPLMd Man page
rcModelPLMr Man page
rcModelPLMrc Man page
rcModelPLMrr Man page
rcModelWPLM Man page
rcModelWPLMr Man page
rcModelWPLMrc Man page
rcModelWPLMrr Man page
rma.background.correct Man page
subColSummarizeAvg Man page
subColSummarizeAvgLog Man page
subColSummarizeBiweight Man page
subColSummarizeBiweightLog Man page
subColSummarizeLogAvg Man page
subColSummarizeLogMedian Man page
subColSummarizeMedian Man page
subColSummarizeMedianLog Man page
subColSummarizeMedianpolish Man page
subColSummarizeMedianpolishLog Man page
subrcModelMedianPolish Man page
subrcModelPLM Man page
subrcModelWPLM Man page

Files

preprocessCore/CHANGELOG
preprocessCore/DESCRIPTION
preprocessCore/NAMESPACE
preprocessCore/R
preprocessCore/R/colSummarize.R preprocessCore/R/normalize.quantiles.R preprocessCore/R/plmd.R preprocessCore/R/plmr.R preprocessCore/R/quantile_extensions.R preprocessCore/R/rcModel.R preprocessCore/R/rma.background.correct.R preprocessCore/R/subColSummarize.R
preprocessCore/configure
preprocessCore/configure.in
preprocessCore/inst
preprocessCore/inst/include
preprocessCore/inst/include/R_subColSummarize.h
preprocessCore/inst/include/R_subColSummarize_stubs.c
preprocessCore/inst/include/avg.h
preprocessCore/inst/include/avg_log.h
preprocessCore/inst/include/biweight.h
preprocessCore/inst/include/lm.h
preprocessCore/inst/include/log_avg.h
preprocessCore/inst/include/log_median.h
preprocessCore/inst/include/median.h
preprocessCore/inst/include/median_log.h
preprocessCore/inst/include/medianpolish.h
preprocessCore/inst/include/plmd.h
preprocessCore/inst/include/plmr.h
preprocessCore/inst/include/preprocessCore_background_stubs.c
preprocessCore/inst/include/preprocessCore_background_stubs.h
preprocessCore/inst/include/preprocessCore_normalization_stubs.c
preprocessCore/inst/include/preprocessCore_normalization_stubs.h
preprocessCore/inst/include/preprocessCore_summarization_stubs.c
preprocessCore/inst/include/preprocessCore_summarization_stubs.h
preprocessCore/inst/include/qnorm.h
preprocessCore/inst/include/rlm.h
preprocessCore/inst/include/rlm_se.h
preprocessCore/inst/include/rma_background4.h
preprocessCore/inst/include/weightedkerneldensity_stubs.c
preprocessCore/inst/include/weightedkerneldensity_stubs.h
preprocessCore/man
preprocessCore/man/colSummarize.Rd preprocessCore/man/normalize.quantiles.Rd preprocessCore/man/normalize.quantiles.in.blocks.Rd preprocessCore/man/normalize.quantiles.robust.Rd preprocessCore/man/normalize.quantiles.target.Rd preprocessCore/man/rcModelPLMd.Rd preprocessCore/man/rcModelPLMr.Rd preprocessCore/man/rcModels.Rd preprocessCore/man/rma.background.correct.Rd preprocessCore/man/subColSummarize.Rd preprocessCore/man/subrcModels.Rd
preprocessCore/src
preprocessCore/src/Makevars
preprocessCore/src/Makevars.in
preprocessCore/src/Makevars.win
preprocessCore/src/R_colSummarize.c
preprocessCore/src/R_colSummarize.h
preprocessCore/src/R_plmd_interfaces.c
preprocessCore/src/R_plmr_interfaces.c
preprocessCore/src/R_plmr_interfaces.h
preprocessCore/src/R_rlm_interfaces.c
preprocessCore/src/R_rlm_interfaces.h
preprocessCore/src/R_subColSummarize.c
preprocessCore/src/R_subColSummarize.h
preprocessCore/src/R_subrcModel_interfaces.c
preprocessCore/src/avg.c
preprocessCore/src/avg.h
preprocessCore/src/avg_log.c
preprocessCore/src/avg_log.h
preprocessCore/src/biweight.c
preprocessCore/src/biweight.h
preprocessCore/src/dqrls.h
preprocessCore/src/init_package.c
preprocessCore/src/lm.c
preprocessCore/src/lm.h
preprocessCore/src/log_avg.c
preprocessCore/src/log_avg.h
preprocessCore/src/log_median.c
preprocessCore/src/log_median.h
preprocessCore/src/matrix_functions.c
preprocessCore/src/matrix_functions.h
preprocessCore/src/median.c
preprocessCore/src/median.h
preprocessCore/src/median_log.c
preprocessCore/src/median_log.h
preprocessCore/src/medianpolish.c
preprocessCore/src/medianpolish.h
preprocessCore/src/plmd.c
preprocessCore/src/plmd.h
preprocessCore/src/plmr.c
preprocessCore/src/plmr.h
preprocessCore/src/psi_fns.c
preprocessCore/src/psi_fns.h
preprocessCore/src/qnorm.c
preprocessCore/src/qnorm.h
preprocessCore/src/rlm.c
preprocessCore/src/rlm.h
preprocessCore/src/rlm_anova.c
preprocessCore/src/rlm_se.c
preprocessCore/src/rlm_se.h
preprocessCore/src/rma_background4.c
preprocessCore/src/rma_background4.h
preprocessCore/src/rma_common.c
preprocessCore/src/rma_common.h
preprocessCore/src/weightedkerneldensity.c
preprocessCore/src/weightedkerneldensity.h
preprocessCore/tests
preprocessCore/tests/PLMdtest.R
preprocessCore/tests/qnormtest.R

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