OrganismDbi: Software to enable the smooth interfacing of different database packages

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

AuthorMarc Carlson, Herve Pages, Martin Morgan, Valerie Obenchain
Date of publicationNone
MaintainerBiocore Data Team <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.16.0

View on Bioconductor

Files in this package

OrganismDbi/DESCRIPTION
OrganismDbi/NAMESPACE
OrganismDbi/NEWS
OrganismDbi/R
OrganismDbi/R/AllClasses.R OrganismDbi/R/AllGenerics.R OrganismDbi/R/createOrganismPackage.R OrganismDbi/R/methods-select.R OrganismDbi/R/methods-transcripts.R OrganismDbi/R/seqinfo.R OrganismDbi/R/test_OrganismDbi_package.R
OrganismDbi/build
OrganismDbi/build/vignette.rds
OrganismDbi/inst
OrganismDbi/inst/OrgPkg-template
OrganismDbi/inst/OrgPkg-template/DESCRIPTION
OrganismDbi/inst/OrgPkg-template/NAMESPACE
OrganismDbi/inst/OrgPkg-template/R
OrganismDbi/inst/OrgPkg-template/R/zzz.R
OrganismDbi/inst/OrgPkg-template/man
OrganismDbi/inst/OrgPkg-template/man/@PKGNAME@.Rd
OrganismDbi/inst/doc
OrganismDbi/inst/doc/OrganismDbi.R
OrganismDbi/inst/doc/OrganismDbi.Rnw
OrganismDbi/inst/doc/OrganismDbi.pdf
OrganismDbi/inst/extdata
OrganismDbi/inst/extdata/myTxDb.sqlite
OrganismDbi/inst/script
OrganismDbi/inst/script/makeOrgDbPkgs.R
OrganismDbi/inst/script/test_PkgFreeExamples.R
OrganismDbi/inst/unitTests
OrganismDbi/inst/unitTests/test_construction.R
OrganismDbi/inst/unitTests/test_mapIds.R
OrganismDbi/inst/unitTests/test_select.R
OrganismDbi/inst/unitTests/test_transcripts.R
OrganismDbi/inst/unitTests/test_wrappedFuns.R
OrganismDbi/man
OrganismDbi/man/OrganismDb.Rd OrganismDbi/man/coordinate-mapping-method.Rd OrganismDbi/man/makeOrganismDbFromBiomart.Rd OrganismDbi/man/makeOrganismDbFromTxDb.Rd OrganismDbi/man/makeOrganismDbFromUCSC.Rd OrganismDbi/man/makeOrganismPackage.Rd OrganismDbi/man/rangeBasedAccessors.Rd
OrganismDbi/tests
OrganismDbi/tests/OrganismDbi_unit_tests.R
OrganismDbi/vignettes
OrganismDbi/vignettes/OrganismDbi.Rnw
OrganismDbi/vignettes/databaseTypes.pdf

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