affyio: Tools for parsing Affymetrix data files

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

Author
Benjamin Milo Bolstad <bmb@bmbolstad.com>
Date of publication
None
Maintainer
Benjamin Milo Bolstad <bmb@bmbolstad.com>
License
LGPL (>= 2)
Version
1.44.0
URLs

View on Bioconductor

Man pages

check.cdf.type
CDF file format function
get.celfile.dates
Extract Dates from CEL files
read_abatch
Internal affyio functions
read.cdffile.list
Read CDF file into an R list
read.celfile
Read a CEL file into an R list
read.celfile.header
Read header information from cel file
read.celfile.probeintensity.matrices
Read PM or MM from CEL file into matrices

Files in this package

affyio/DESCRIPTION
affyio/HISTORY
affyio/NAMESPACE
affyio/R
affyio/R/check.cdf.type.R
affyio/R/get.celfile.dates.R
affyio/R/read.cdffile.list.R
affyio/R/read.celfile.R
affyio/R/read.celfile.header.R
affyio/R/read.probematrices.R
affyio/R/read_abatch.R
affyio/aclocal.m4
affyio/configure
affyio/configure.in
affyio/man
affyio/man/check.cdf.type.Rd
affyio/man/get.celfile.dates.Rd
affyio/man/read.cdffile.list.Rd
affyio/man/read.celfile.Rd
affyio/man/read.celfile.header.Rd
affyio/man/read.celfile.probeintensity.matrices.Rd
affyio/man/read_abatch.Rd
affyio/src
affyio/src/Makevars
affyio/src/Makevars.in
affyio/src/Makevars.win
affyio/src/fread_functions.c
affyio/src/fread_functions.h
affyio/src/init_package.c
affyio/src/read_abatch.c
affyio/src/read_abatch.h
affyio/src/read_bpmap.c
affyio/src/read_cdf_xda.c
affyio/src/read_cdffile2.c
affyio/src/read_celfile_generic.c
affyio/src/read_celfile_generic.h
affyio/src/read_clf.c
affyio/src/read_generic.c
affyio/src/read_generic.h
affyio/src/read_multichannel_celfile_generic.c
affyio/src/read_multichannel_celfile_generic.h
affyio/src/read_pgf.c