AnnotationForge: Code for Building Annotation Database Packages

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

AuthorMarc Carlson, Herve Pages
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.16.0

View on Bioconductor

Files in this package

AnnotationForge/DESCRIPTION
AnnotationForge/NAMESPACE
AnnotationForge/NEWS
AnnotationForge/R
AnnotationForge/R/NCBI_getters.R AnnotationForge/R/makeAnnDbPkg.R AnnotationForge/R/makeChipPackageFromDataFrames.R AnnotationForge/R/makeInparanoidDbs.R AnnotationForge/R/makeOrgPackage.R AnnotationForge/R/makeOrgPackageFromNCBI.R AnnotationForge/R/makeProbePackage.R AnnotationForge/R/sqlForge_baseMapBuilder.R AnnotationForge/R/sqlForge_makeAnnPkgs.R AnnotationForge/R/sqlForge_schemaGen.R AnnotationForge/R/sqlForge_seqnames.R AnnotationForge/R/sqlForge_tableBuilder.R AnnotationForge/R/sqlForge_utils.R AnnotationForge/R/sqlForge_wrapBaseDBPkgs.R AnnotationForge/R/test_AnnotationForge_package.R
AnnotationForge/build
AnnotationForge/build/vignette.rds
AnnotationForge/inst
AnnotationForge/inst/AnnDbPkg-templates
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYCENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO2ALLTAIRS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYCENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2ALLPROBES.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/LOCUSTAG.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PROTEINGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/OBSOLETE.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/SYNONYM.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/TERM.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/R
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGVSORGMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/LICENSE
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/R
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/ENZYMEID2GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/EXTID2PATHID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/GO2ENZYMEID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2EXTID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2NAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHNAME2ID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ALIAS2ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GO2ALLORFS.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ALIAS2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASECG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/OMIM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PFAM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PROSITE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/WORMBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ZFIN.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLTRANS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASECG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASEPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/OMIM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PFAM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PROSITE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UCSCKG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/WORMBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ZFIN.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/R
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/FORWARDBIMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/PDB.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/PDB2AC.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/REVERSEBIMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/SCOP.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/SCOP2AC.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/R
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ALIAS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/COMMON2ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/DESCRIPTION.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBLPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBLTRANS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/GO2ALLORFS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/INTERPRO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/REJECTORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/SGD.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/SMART.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ALIAS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/DESCRIPTION.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO2ALLPROBES.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/R
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SGD.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/test.R
AnnotationForge/inst/NOTES-Herve
AnnotationForge/inst/ProbePkg-template
AnnotationForge/inst/ProbePkg-template/DESCRIPTION
AnnotationForge/inst/ProbePkg-template/NAMESPACE
AnnotationForge/inst/ProbePkg-template/R
AnnotationForge/inst/ProbePkg-template/R/zzz.R
AnnotationForge/inst/ProbePkg-template/data
AnnotationForge/inst/ProbePkg-template/man
AnnotationForge/inst/ProbePkg-template/man/@PKGNAME@.Rd
AnnotationForge/inst/TODO
AnnotationForge/inst/doc
AnnotationForge/inst/doc/MakingNewAnnotationPackages.R
AnnotationForge/inst/doc/MakingNewAnnotationPackages.Rnw
AnnotationForge/inst/doc/MakingNewAnnotationPackages.pdf
AnnotationForge/inst/doc/MakingNewOrganismPackages.R
AnnotationForge/inst/doc/MakingNewOrganismPackages.Rmd
AnnotationForge/inst/doc/MakingNewOrganismPackages.html
AnnotationForge/inst/doc/SQLForge.R
AnnotationForge/inst/doc/SQLForge.Rnw
AnnotationForge/inst/doc/SQLForge.pdf
AnnotationForge/inst/doc/makeProbePackage.R
AnnotationForge/inst/doc/makeProbePackage.Rnw
AnnotationForge/inst/doc/makeProbePackage.pdf
AnnotationForge/inst/extdata
AnnotationForge/inst/extdata/GO_finch.txt
AnnotationForge/inst/extdata/GentlemanLab
AnnotationForge/inst/extdata/GentlemanLab/ANNDBPKG-INDEX.TXT
AnnotationForge/inst/extdata/GentlemanLab/chip-batch-script.R
AnnotationForge/inst/extdata/GentlemanLab/generateSchemas.R
AnnotationForge/inst/extdata/GentlemanLab/org-batch-script.R
AnnotationForge/inst/extdata/HG-U95Av2_probe_tab.gz
AnnotationForge/inst/extdata/finch_info.txt
AnnotationForge/inst/extdata/hcg110_ID
AnnotationForge/inst/extdata/hgu95av2_ID
AnnotationForge/inst/extdata/inp8_Full_species_mapping
AnnotationForge/inst/extdata/inp8_metadata
AnnotationForge/inst/extdata/unigene.txt
AnnotationForge/inst/extdata/viableIDs.rda
AnnotationForge/inst/script
AnnotationForge/inst/script/fasterOrgRecipe.R
AnnotationForge/inst/script/makeNoSchemaChipDb.R
AnnotationForge/inst/script/makeNoSchemaDb.R
AnnotationForge/inst/script/viableIDs.R
AnnotationForge/inst/seqnames-template
AnnotationForge/inst/seqnames-template/DESCRIPTION
AnnotationForge/inst/seqnames-template/NAMESPACE
AnnotationForge/inst/seqnames-template/inst
AnnotationForge/inst/seqnames-template/inst/extdata
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Arabidopsis_thaliana.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Caenorhabditis_elegans.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Cyanidioschyzon_merolae.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Drosophila_melanogaster.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Homo_sapiens.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Oryza_sativa.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Populus_trichocarpa.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Saccharomyces_cerevisiae.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Zea_mays.csv
AnnotationForge/inst/unitTests
AnnotationForge/inst/unitTests/test_makeOrgPackage.R
AnnotationForge/man
AnnotationForge/man/AnnDbPkg-maker.Rd AnnotationForge/man/available.db0pkgs.Rd AnnotationForge/man/generateSeqnames_db.Rd AnnotationForge/man/getProbeDataAffy.Rd AnnotationForge/man/getProbeData_1lq.Rd AnnotationForge/man/makeChipPackageFromDataFrames.Rd AnnotationForge/man/makeInpDb.Rd AnnotationForge/man/makeOrgPackage.Rd AnnotationForge/man/makeOrgPackageFromNCBI.Rd AnnotationForge/man/makeProbePackage.Rd AnnotationForge/man/sqlForge-makeCHIPDB.Rd AnnotationForge/man/sqlForge-popDB.Rd AnnotationForge/man/sqlForge-wrapDBPackages.Rd
AnnotationForge/tests
AnnotationForge/tests/AnnotationForge_unit_tests.R
AnnotationForge/vignettes
AnnotationForge/vignettes/DBschema-discussion.txt
AnnotationForge/vignettes/Homo_sapiens.pdf
AnnotationForge/vignettes/MakingNewAnnotationPackages.Rnw
AnnotationForge/vignettes/MakingNewOrganismPackages.Rmd
AnnotationForge/vignettes/SQLForge.Rnw
AnnotationForge/vignettes/makeProbePackage.Rnw

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