AnnotationForge: Code for Building Annotation Database Packages

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author
Marc Carlson, Herve Pages
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
1.16.0

View on Bioconductor

Man pages

AnnDbPkg-maker
Create an SQLite-based annotation package
available.db0pkgs
available.db0pkgs
generateSeqnames_db
Generates the seqnames.db package and database
getProbeData_1lq
Read a 1lq file for an Affymetrix genechip
getProbeDataAffy
Read a data file describing the probe sequences on an...
makeChipPackageFromDataFrames
Making a chip package from annotations available from...
makeInpDb
Builds an individual DB from online files at inparanoid that...
makeOrgPackage
Making an organism package from annotations available from a...
makeOrgPackageFromNCBI
Make an organism package from annotations available from...
makeProbePackage
Make a package with probe sequence related data for...
sqlForge-makeCHIPDB
Creates a sqlite database, and then makes an annotation...
sqlForge-popDB
Populates an SQLite DB with and produces a schema definition
sqlForge-wrapDBPackages
Wrap up all the Base Databases into Packages for distribution

Files in this package

AnnotationForge/DESCRIPTION
AnnotationForge/NAMESPACE
AnnotationForge/NEWS
AnnotationForge/R
AnnotationForge/R/NCBI_getters.R
AnnotationForge/R/makeAnnDbPkg.R
AnnotationForge/R/makeChipPackageFromDataFrames.R
AnnotationForge/R/makeInparanoidDbs.R
AnnotationForge/R/makeOrgPackage.R
AnnotationForge/R/makeOrgPackageFromNCBI.R
AnnotationForge/R/makeProbePackage.R
AnnotationForge/R/sqlForge_baseMapBuilder.R
AnnotationForge/R/sqlForge_makeAnnPkgs.R
AnnotationForge/R/sqlForge_schemaGen.R
AnnotationForge/R/sqlForge_seqnames.R
AnnotationForge/R/sqlForge_tableBuilder.R
AnnotationForge/R/sqlForge_utils.R
AnnotationForge/R/sqlForge_wrapBaseDBPkgs.R
AnnotationForge/R/test_AnnotationForge_package.R
AnnotationForge/build
AnnotationForge/build/vignette.rds
AnnotationForge/inst
AnnotationForge/inst/AnnDbPkg-templates
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYCENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO2ALLTAIRS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYCENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2ALLPROBES.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/LOCUSTAG.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PROTEINGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/OBSOLETE.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/SYNONYM.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/TERM.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/R
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGVSORGMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/LICENSE
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/R
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/ENZYMEID2GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/EXTID2PATHID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/GO2ENZYMEID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2EXTID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2NAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHNAME2ID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ALIAS2ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GO2ALLORFS.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ALIAS2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASECG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/OMIM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PFAM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PROSITE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/WORMBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ZFIN.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLTRANS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASECG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASEPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/OMIM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PFAM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PROSITE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UCSCKG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/WORMBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ZFIN.Rd
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AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB
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AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/unit
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB
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AnnotationForge/inst/NOTES-Herve
AnnotationForge/inst/ProbePkg-template
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AnnotationForge/inst/ProbePkg-template/R
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AnnotationForge/inst/ProbePkg-template/man
AnnotationForge/inst/ProbePkg-template/man/@PKGNAME@.Rd
AnnotationForge/inst/TODO
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AnnotationForge/inst/extdata/GentlemanLab
AnnotationForge/inst/extdata/GentlemanLab/ANNDBPKG-INDEX.TXT
AnnotationForge/inst/extdata/GentlemanLab/chip-batch-script.R
AnnotationForge/inst/extdata/GentlemanLab/generateSchemas.R
AnnotationForge/inst/extdata/GentlemanLab/org-batch-script.R
AnnotationForge/inst/extdata/HG-U95Av2_probe_tab.gz
AnnotationForge/inst/extdata/finch_info.txt
AnnotationForge/inst/extdata/hcg110_ID
AnnotationForge/inst/extdata/hgu95av2_ID
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AnnotationForge/inst/extdata/unigene.txt
AnnotationForge/inst/extdata/viableIDs.rda
AnnotationForge/inst/script
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AnnotationForge/inst/script/makeNoSchemaChipDb.R
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AnnotationForge/inst/script/viableIDs.R
AnnotationForge/inst/seqnames-template
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AnnotationForge/man
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AnnotationForge/man/available.db0pkgs.Rd
AnnotationForge/man/generateSeqnames_db.Rd
AnnotationForge/man/getProbeDataAffy.Rd
AnnotationForge/man/getProbeData_1lq.Rd
AnnotationForge/man/makeChipPackageFromDataFrames.Rd
AnnotationForge/man/makeInpDb.Rd
AnnotationForge/man/makeOrgPackage.Rd
AnnotationForge/man/makeOrgPackageFromNCBI.Rd
AnnotationForge/man/makeProbePackage.Rd
AnnotationForge/man/sqlForge-makeCHIPDB.Rd
AnnotationForge/man/sqlForge-popDB.Rd
AnnotationForge/man/sqlForge-wrapDBPackages.Rd
AnnotationForge/tests
AnnotationForge/tests/AnnotationForge_unit_tests.R
AnnotationForge/vignettes
AnnotationForge/vignettes/DBschema-discussion.txt
AnnotationForge/vignettes/Homo_sapiens.pdf
AnnotationForge/vignettes/MakingNewAnnotationPackages.Rnw
AnnotationForge/vignettes/MakingNewOrganismPackages.Rmd
AnnotationForge/vignettes/SQLForge.Rnw
AnnotationForge/vignettes/makeProbePackage.Rnw