AnnotationForge: Code for Building Annotation Database Packages

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

AuthorMarc Carlson, Herve Pages
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.16.1

View on Bioconductor

Functions

AnnDbPkgSeed Man page
AnnDbPkgSeed-class Man page
available.chipdbschemas Man page
available.db0pkgs Man page
available.dbschemas Man page
class:AnnDbPkgSeed Man page
generateSeqnames.db Man page
getProbeData_1lq Man page
getProbeDataAffy Man page
loadAnnDbPkgIndex Man page
makeAnnDbPkg Man page
makeAnnDbPkg,AnnDbPkgSeed-method Man page
makeAnnDbPkg,character-method Man page
makeAnnDbPkg,list-method Man page
makeChipPackage Man page
makeDBPackage Man page
makeInpDb Man page
makeOrgPackage Man page
makeOrgPackageFromNCBI Man page
makeProbePackage Man page
popBOVINECHIPDB Man page
popBOVINEDB Man page
popCANINECHIPDB Man page
popCANINEDB Man page
popCHICKENCHIPDB Man page
popCHICKENDB Man page
popECOLICHIPDB Man page
popECOLIDB Man page
popFLYCHIPDB Man page
popFLYDB Man page
popHUMANCHIPDB Man page
popHUMANDB Man page
popMALARIADB Man page
popMOUSECHIPDB Man page
popMOUSEDB Man page
popPIGCHIPDB Man page
popPIGDB Man page
popRATCHIPDB Man page
popRATDB Man page
populateDB Man page
popWORMCHIPDB Man page
popWORMDB Man page
popYEASTDB Man page
popYEASTNCBIDB Man page
popZEBRAFISHCHIPDB Man page
popZEBRAFISHDB Man page
wrapBaseDBPackages Man page

Files

AnnotationForge/DESCRIPTION
AnnotationForge/NAMESPACE
AnnotationForge/NEWS
AnnotationForge/R
AnnotationForge/R/NCBI_getters.R AnnotationForge/R/makeAnnDbPkg.R AnnotationForge/R/makeChipPackageFromDataFrames.R AnnotationForge/R/makeInparanoidDbs.R AnnotationForge/R/makeOrgPackage.R AnnotationForge/R/makeOrgPackageFromNCBI.R AnnotationForge/R/makeProbePackage.R AnnotationForge/R/sqlForge_baseMapBuilder.R AnnotationForge/R/sqlForge_makeAnnPkgs.R AnnotationForge/R/sqlForge_schemaGen.R AnnotationForge/R/sqlForge_seqnames.R AnnotationForge/R/sqlForge_tableBuilder.R AnnotationForge/R/sqlForge_utils.R AnnotationForge/R/sqlForge_wrapBaseDBPkgs.R AnnotationForge/R/test_AnnotationForge_package.R
AnnotationForge/build
AnnotationForge/build/vignette.rds
AnnotationForge/inst
AnnotationForge/inst/AnnDbPkg-templates
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYCENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO2ALLTAIRS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID2TAIR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYCENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2ALLPROBES.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/LOCUSTAG.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/PROTEINGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/BPPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/CCPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFANCESTOR.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFCHILDREN.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFOFFSPRING.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/MFPARENTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/OBSOLETE.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/SYNONYM.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/TERM.Rd
AnnotationForge/inst/AnnDbPkg-templates/GO.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/R
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGVSORGMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/LICENSE
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/R
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/ENZYMEID2GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/EXTID2PATHID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/GO2ENZYMEID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2EXTID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2NAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/PATHNAME2ID.Rd
AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ALIAS2ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/GO2ALLORFS.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ALIAS2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASECG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/MGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/OMIM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PFAM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/PROSITE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/WORMBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/ZFIN.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLTRANS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASECG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASEPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/MGI.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/OMIM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PFAM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/PROSITE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UCSCKG.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/WORMBASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/ZFIN.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB
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AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB
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AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/R
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man
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AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB
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AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/R
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/UNIGENE.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/DESCRIPTION
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/R
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/FORWARDBIMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/PDB.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/PDB2AC.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/REVERSEBIMAP.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/SCOP.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/SCOP2AC.Rd
AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB
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AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/R
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/R/zzz.R
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ALIAS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/COMMON2ORF.Rd
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AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBLPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBLTRANS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENTREZID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/GO2ALLORFS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/INTERPRO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/REJECTORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/SGD.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/SMART.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/NAMESPACE
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/R
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ALIAS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/BASE.Rd
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLOC.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/DESCRIPTION.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENSEMBL.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GENENAME.Rd
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO2ALLPROBES.Rd
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AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID2PROBE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.Rout.save
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/test.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB
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AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/inst
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/inst/extdata
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ACCNUM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ALIAS2EG.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/BASE.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHR.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHRLENGTHS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ENZYME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GENENAME.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO2ALLEGS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/MAPCOUNTS.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORF.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORGANISM.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PATH.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PMID.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/REFSEQ.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SGD.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SYMBOL.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/UNIPROT.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/man/_dbconn.Rd
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.R
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit
AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/test.R
AnnotationForge/inst/NOTES-Herve
AnnotationForge/inst/ProbePkg-template
AnnotationForge/inst/ProbePkg-template/DESCRIPTION
AnnotationForge/inst/ProbePkg-template/NAMESPACE
AnnotationForge/inst/ProbePkg-template/R
AnnotationForge/inst/ProbePkg-template/R/zzz.R
AnnotationForge/inst/ProbePkg-template/data
AnnotationForge/inst/ProbePkg-template/man
AnnotationForge/inst/ProbePkg-template/man/@PKGNAME@.Rd
AnnotationForge/inst/TODO
AnnotationForge/inst/doc
AnnotationForge/inst/doc/MakingNewAnnotationPackages.R
AnnotationForge/inst/doc/MakingNewAnnotationPackages.Rnw
AnnotationForge/inst/doc/MakingNewAnnotationPackages.pdf
AnnotationForge/inst/doc/MakingNewOrganismPackages.R
AnnotationForge/inst/doc/MakingNewOrganismPackages.Rmd
AnnotationForge/inst/doc/MakingNewOrganismPackages.html
AnnotationForge/inst/doc/SQLForge.R
AnnotationForge/inst/doc/SQLForge.Rnw
AnnotationForge/inst/doc/SQLForge.pdf
AnnotationForge/inst/doc/makeProbePackage.R
AnnotationForge/inst/doc/makeProbePackage.Rnw
AnnotationForge/inst/doc/makeProbePackage.pdf
AnnotationForge/inst/extdata
AnnotationForge/inst/extdata/GO_finch.txt
AnnotationForge/inst/extdata/GentlemanLab
AnnotationForge/inst/extdata/GentlemanLab/ANNDBPKG-INDEX.TXT
AnnotationForge/inst/extdata/GentlemanLab/chip-batch-script.R
AnnotationForge/inst/extdata/GentlemanLab/generateSchemas.R
AnnotationForge/inst/extdata/GentlemanLab/org-batch-script.R
AnnotationForge/inst/extdata/HG-U95Av2_probe_tab.gz
AnnotationForge/inst/extdata/finch_info.txt
AnnotationForge/inst/extdata/hcg110_ID
AnnotationForge/inst/extdata/hgu95av2_ID
AnnotationForge/inst/extdata/inp8_Full_species_mapping
AnnotationForge/inst/extdata/inp8_metadata
AnnotationForge/inst/extdata/unigene.txt
AnnotationForge/inst/extdata/viableIDs.rda
AnnotationForge/inst/script
AnnotationForge/inst/script/fasterOrgRecipe.R
AnnotationForge/inst/script/makeNoSchemaChipDb.R
AnnotationForge/inst/script/makeNoSchemaDb.R
AnnotationForge/inst/script/viableIDs.R
AnnotationForge/inst/seqnames-template
AnnotationForge/inst/seqnames-template/DESCRIPTION
AnnotationForge/inst/seqnames-template/NAMESPACE
AnnotationForge/inst/seqnames-template/inst
AnnotationForge/inst/seqnames-template/inst/extdata
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Arabidopsis_thaliana.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Caenorhabditis_elegans.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Cyanidioschyzon_merolae.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Drosophila_melanogaster.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Homo_sapiens.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Oryza_sativa.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Populus_trichocarpa.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Saccharomyces_cerevisiae.csv
AnnotationForge/inst/seqnames-template/inst/extdata/dataFiles/Zea_mays.csv
AnnotationForge/inst/unitTests
AnnotationForge/inst/unitTests/test_makeOrgPackage.R
AnnotationForge/man
AnnotationForge/man/AnnDbPkg-maker.Rd AnnotationForge/man/available.db0pkgs.Rd AnnotationForge/man/generateSeqnames_db.Rd AnnotationForge/man/getProbeDataAffy.Rd AnnotationForge/man/getProbeData_1lq.Rd AnnotationForge/man/makeChipPackageFromDataFrames.Rd AnnotationForge/man/makeInpDb.Rd AnnotationForge/man/makeOrgPackage.Rd AnnotationForge/man/makeOrgPackageFromNCBI.Rd AnnotationForge/man/makeProbePackage.Rd AnnotationForge/man/sqlForge-makeCHIPDB.Rd AnnotationForge/man/sqlForge-popDB.Rd AnnotationForge/man/sqlForge-wrapDBPackages.Rd
AnnotationForge/tests
AnnotationForge/tests/AnnotationForge_unit_tests.R
AnnotationForge/vignettes
AnnotationForge/vignettes/DBschema-discussion.txt
AnnotationForge/vignettes/Homo_sapiens.pdf
AnnotationForge/vignettes/MakingNewAnnotationPackages.Rnw
AnnotationForge/vignettes/MakingNewOrganismPackages.Rmd
AnnotationForge/vignettes/SQLForge.Rnw
AnnotationForge/vignettes/makeProbePackage.Rnw

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