AnnDbPkg-maker: Create an SQLite-based annotation package

Description Usage Arguments See Also Examples

Description

Create an SQLite-based annotation package from an SQLite file.

Usage

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  makeAnnDbPkg(x, dbfile, dest_dir=".", no.man=FALSE, ...)
  loadAnnDbPkgIndex(file)

Arguments

x

A AnnDbPkgSeed object, a list, a string or a regular expression.

dbfile

The path to the SQLite containing the annotation data for the package to build.

dest_dir

The directory where the package will be created.

file

The path to a DCF file containing the list of annotation packages to build.

no.man

If TRUE then no man page is included in the package.

...

Extra args used for extra filtering.

See Also

AnnDbPkg-checker

Examples

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  ## With a "AnnDbPkgSeed" object:
  seed <- new("AnnDbPkgSeed",
      Package="hgu133a2.db",
      Version="0.0.99",
      PkgTemplate="HUMANCHIP.DB",
      AnnObjPrefix="hgu133a2"
  )
  if (FALSE)
      makeAnnDbPkg(seed, "path/to/hgu133a2.sqlite")

  ## With package names:
  ## (Note that in this case makeAnnDbPkg() will use the package descriptions
  ## found in the master index file ANNDBPKG-INDEX.TXT located in the
  ## AnnotationDbi package.)
  if (FALSE)
      makeAnnDbPkg(c("hgu95av2.db", "hgu133a2.db"))

  ## A character vector of length 1 is treated as a regular expression:
  if (FALSE)
      makeAnnDbPkg("hgu.*")
  ## To make all the packages described in the master index:
  if (FALSE)
      makeAnnDbPkg("")
  ## Extra args can be used to narrow down the roaster of packages to make:
  if (FALSE) {
      makeAnnDbPkg("", PkgTemplate="HUMANCHIP.DB", manufacturer="Affymetrix")
      makeAnnDbPkg(".*[3k]\\.db", species=c("Mouse", "Rat"))
  }

  ## The master index file ANNDBPKG-INDEX.TXT can be loaded with:
  loadAnnDbPkgIndex()

Example output

Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

       Package                    Version PkgTemplate         
  [1,] "hcg110.db"                "3.2.3" "NCBICHIP.DB"       
  [2,] "hgfocus.db"               "3.2.3" "NCBICHIP.DB"       
  [3,] "hgu133a2.db"              "3.2.3" "NCBICHIP.DB"       
  [4,] "hgu133a.db"               "3.2.3" "NCBICHIP.DB"       
  [5,] "hgu133b.db"               "3.2.3" "NCBICHIP.DB"       
  [6,] "hgu133plus2.db"           "3.2.3" "NCBICHIP.DB"       
  [7,] "hgu219.db"                "3.2.3" "NCBICHIP.DB"       
  [8,] "hgu95a.db"                "3.2.3" "NCBICHIP.DB"       
  [9,] "hgu95av2.db"              "3.2.3" "NCBICHIP.DB"       
 [10,] "hgu95b.db"                "3.2.3" "NCBICHIP.DB"       
 [11,] "hgu95c.db"                "3.2.3" "NCBICHIP.DB"       
 [12,] "hgu95d.db"                "3.2.3" "NCBICHIP.DB"       
 [13,] "hgu95e.db"                "3.2.3" "NCBICHIP.DB"       
 [14,] "hu35ksuba.db"             "3.2.3" "NCBICHIP.DB"       
 [15,] "hu35ksubb.db"             "3.2.3" "NCBICHIP.DB"       
 [16,] "hu35ksubc.db"             "3.2.3" "NCBICHIP.DB"       
 [17,] "hu35ksubd.db"             "3.2.3" "NCBICHIP.DB"       
 [18,] "hthgu133a.db"             "3.2.3" "NCBICHIP.DB"       
 [19,] "hthgu133b.db"             "3.2.3" "NCBICHIP.DB"       
 [20,] "hu6800.db"                "3.2.3" "NCBICHIP.DB"       
 [21,] "u133x3p.db"               "3.2.3" "NCBICHIP.DB"       
 [22,] "hgug4100a.db"             "3.2.3" "NCBICHIP.DB"       
 [23,] "hgug4101a.db"             "3.2.3" "NCBICHIP.DB"       
 [24,] "hgug4110b.db"             "3.2.3" "NCBICHIP.DB"       
 [25,] "hgug4111a.db"             "3.2.3" "NCBICHIP.DB"       
 [26,] "hgug4112a.db"             "3.2.3" "NCBICHIP.DB"       
 [27,] "HsAgilentDesign026652.db" "3.2.3" "NCBICHIP.DB"       
 [28,] "hguatlas13k.db"           "3.2.3" "NCBICHIP.DB"       
 [29,] "hguqiagenv3.db"           "3.2.3" "NCBICHIP.DB"       
 [30,] "hgubeta7.db"              "3.2.3" "NCBICHIP.DB"       
 [31,] "hguDKFZ31.db"             "3.2.3" "NCBICHIP.DB"       
 [32,] "HuO22.db"                 "3.2.3" "NCBICHIP.DB"       
 [33,] "JazaeriMetaData.db"       "3.2.3" "NCBICHIP.DB"       
 [34,] "Norway981.db"             "3.2.3" "NCBICHIP.DB"       
 [35,] "OperonHumanV3.db"         "3.2.3" "NCBICHIP.DB"       
 [36,] "PartheenMetaData.db"      "3.2.3" "NCBICHIP.DB"       
 [37,] "pedbarrayv9.db"           "3.2.3" "NCBICHIP.DB"       
 [38,] "pedbarrayv10.db"          "3.2.3" "NCBICHIP.DB"       
 [39,] "Roberts2005Annotation.db" "3.2.3" "NCBICHIP.DB"       
 [40,] "SHDZ.db"                  "3.2.3" "NCBICHIP.DB"       
 [41,] "POCRCannotation.db"       "3.2.3" "NCBICHIP.DB"       
 [42,] "Hs6UG171.db"              "3.2.3" "NCBICHIP.DB"       
 [43,] "LAPOINTE.db"              "3.2.3" "NCBICHIP.DB"       
 [44,] "mgu74a.db"                "3.2.3" "NCBICHIP.DB"       
 [45,] "mgu74av2.db"              "3.2.3" "NCBICHIP.DB"       
 [46,] "mgu74b.db"                "3.2.3" "NCBICHIP.DB"       
 [47,] "mgu74bv2.db"              "3.2.3" "NCBICHIP.DB"       
 [48,] "mgu74c.db"                "3.2.3" "NCBICHIP.DB"       
 [49,] "mgu74cv2.db"              "3.2.3" "NCBICHIP.DB"       
 [50,] "moe430a.db"               "3.2.3" "NCBICHIP.DB"       
 [51,] "moe430b.db"               "3.2.3" "NCBICHIP.DB"       
 [52,] "mouse4302.db"             "3.2.3" "NCBICHIP.DB"       
 [53,] "mouse430a2.db"            "3.2.3" "NCBICHIP.DB"       
 [54,] "mu11ksuba.db"             "3.2.3" "NCBICHIP.DB"       
 [55,] "mu11ksubb.db"             "3.2.3" "NCBICHIP.DB"       
 [56,] "mu19ksuba.db"             "3.2.3" "NCBICHIP.DB"       
 [57,] "mu19ksubb.db"             "3.2.3" "NCBICHIP.DB"       
 [58,] "mu19ksubc.db"             "3.2.3" "NCBICHIP.DB"       
 [59,] "mgug4104a.db"             "3.2.3" "NCBICHIP.DB"       
 [60,] "mgug4120a.db"             "3.2.3" "NCBICHIP.DB"       
 [61,] "mgug4121a.db"             "3.2.3" "NCBICHIP.DB"       
 [62,] "mgug4122a.db"             "3.2.3" "NCBICHIP.DB"       
 [63,] "MmAgilentDesign026655.db" "3.2.3" "NCBICHIP.DB"       
 [64,] "mguatlas5k.db"            "3.2.3" "NCBICHIP.DB"       
 [65,] "mpedbarray.db"            "3.2.3" "NCBICHIP.DB"       
 [66,] "Mu15v1.db"                "3.2.3" "NCBICHIP.DB"       
 [67,] "Mu22v3.db"                "3.2.3" "NCBICHIP.DB"       
 [68,] "rae230a.db"               "3.2.3" "NCBICHIP.DB"       
 [69,] "rae230b.db"               "3.2.3" "NCBICHIP.DB"       
 [70,] "rat2302.db"               "3.2.3" "NCBICHIP.DB"       
 [71,] "rgu34a.db"                "3.2.3" "NCBICHIP.DB"       
 [72,] "rgu34b.db"                "3.2.3" "NCBICHIP.DB"       
 [73,] "rgu34c.db"                "3.2.3" "NCBICHIP.DB"       
 [74,] "rnu34.db"                 "3.2.3" "NCBICHIP.DB"       
 [75,] "rtu34.db"                 "3.2.3" "NCBICHIP.DB"       
 [76,] "rgug4105a.db"             "3.2.3" "NCBICHIP.DB"       
 [77,] "rgug4130a.db"             "3.2.3" "NCBICHIP.DB"       
 [78,] "rgug4131a.db"             "3.2.3" "NCBICHIP.DB"       
 [79,] "RnAgilentDesign028282.db" "3.2.3" "NCBICHIP.DB"       
 [80,] "rguatlas4k.db"            "3.2.3" "NCBICHIP.DB"       
 [81,] "drosgenome1.db"           "3.2.3" "NCBICHIP.DB"       
 [82,] "drosophila2.db"           "3.2.3" "NCBICHIP.DB"       
 [83,] "indac.db"                 "3.2.3" "NCBICHIP.DB"       
 [84,] "yeast2.db"                "3.2.3" "YEASTCHIP.DB"      
 [85,] "ygs98.db"                 "3.2.3" "YEASTCHIP.DB"      
 [86,] "ag.db"                    "3.2.3" "ARABIDOPSISCHIP.DB"
 [87,] "ath1121501.db"            "3.2.3" "ARABIDOPSISCHIP.DB"
 [88,] "zebrafish.db"             "3.2.3" "NCBICHIP.DB"       
 [89,] "canine.db"                "3.2.3" "NCBICHIP.DB"       
 [90,] "canine2.db"               "3.2.3" "NCBICHIP.DB"       
 [91,] "celegans.db"              "3.2.3" "NCBICHIP.DB"       
 [92,] "chicken.db"               "3.2.3" "NCBICHIP.DB"       
 [93,] "bovine.db"                "3.2.3" "NCBICHIP.DB"       
 [94,] "porcine.db"               "3.2.3" "NCBICHIP.DB"       
 [95,] "xlaevis.db"               "3.2.3" "NCBICHIP.DB"       
 [96,] "ecoli2.db"                "3.2.3" "NCBICHIP.DB"       
 [97,] "org.Hs.eg.db"             "3.4.1" "NCBIORG.DB"        
 [98,] "org.Pf.plasmo.db"         "3.4.1" "MALARIA.DB"        
 [99,] "org.Mm.eg.db"             "3.4.1" "NCBIORG.DB"        
[100,] "org.Rn.eg.db"             "3.4.1" "NCBIORG.DB"        
[101,] "org.Dm.eg.db"             "3.4.1" "NCBIORG.DB"        
[102,] "org.Sc.sgd.db"            "3.4.1" "YEAST.DB"          
[103,] "org.Dr.eg.db"             "3.4.1" "NCBIORG.DB"        
[104,] "org.EcK12.eg.db"          "3.4.1" "NCBIORG.DB"        
[105,] "org.EcSakai.eg.db"        "3.4.1" "NCBIORG.DB"        
[106,] "org.Cf.eg.db"             "3.4.1" "NCBIORG.DB"        
[107,] "org.Bt.eg.db"             "3.4.1" "NCBIORG.DB"        
[108,] "org.Ce.eg.db"             "3.4.1" "NCBIORG.DB"        
[109,] "org.Ss.eg.db"             "3.4.1" "NCBIORG.DB"        
[110,] "org.Gg.eg.db"             "3.4.1" "NCBIORG.DB"        
[111,] "org.Sco.eg.db"            "3.4.1" "COELICOLOR.DB"     
[112,] "org.Sc.eg.db"             "3.4.1" "YEASTNCBI.DB"      
[113,] "org.Pt.eg.db"             "3.4.1" "NCBIORG.DB"        
[114,] "org.Mmu.eg.db"            "3.4.1" "NCBIORG.DB"        
[115,] "org.At.tair.db"           "3.4.1" "ARABIDOPSIS.DB"    
[116,] "org.Ag.eg.db"             "3.4.1" "NCBIORG.DB"        
[117,] "org.Xl.eg.db"             "3.4.1" "NCBIORG.DB"        
[118,] "GO.db"                    "3.4.1" "GO.DB"             
[119,] "KEGG.db"                  "3.2.3" "KEGG.DB"           
[120,] "hom.Hs.inp.db"            "3.2.3" "INPARANOID.DB"     
[121,] "hom.Mm.inp.db"            "3.2.3" "INPARANOID.DB"     
[122,] "hom.Rn.inp.db"            "3.2.3" "INPARANOID.DB"     
[123,] "hom.Dm.inp.db"            "3.2.3" "INPARANOID.DB"     
[124,] "hom.Sc.inp.db"            "3.2.3" "INPARANOID.DB"     
[125,] "hom.At.inp.db"            "3.2.3" "INPARANOID.DB"     
[126,] "hom.Dr.inp.db"            "3.2.3" "INPARANOID.DB"     
[127,] "hom.Ce.inp.db"            "3.2.3" "INPARANOID.DB"     
[128,] "PFAM.db"                  "3.4.1" "PFAM.DB"           
       DBfile                                                                                                  
  [1,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hcg110.sqlite"               
  [2,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgfocus.sqlite"              
  [3,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133a2.sqlite"             
  [4,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133a.sqlite"              
  [5,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133b.sqlite"              
  [6,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133plus2.sqlite"          
  [7,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu219.sqlite"               
  [8,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95a.sqlite"               
  [9,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95av2.sqlite"             
 [10,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95b.sqlite"               
 [11,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95c.sqlite"               
 [12,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95d.sqlite"               
 [13,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95e.sqlite"               
 [14,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksuba.sqlite"            
 [15,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubb.sqlite"            
 [16,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubc.sqlite"            
 [17,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubd.sqlite"            
 [18,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hthgu133a.sqlite"            
 [19,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hthgu133b.sqlite"            
 [20,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu6800.sqlite"               
 [21,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/u133x3p.sqlite"              
 [22,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4100a.sqlite"            
 [23,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4101a.sqlite"            
 [24,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4110b.sqlite"            
 [25,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4111a.sqlite"            
 [26,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4112a.sqlite"            
 [27,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/HsAgilentDesign026652.sqlite"
 [28,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguatlas13k.sqlite"          
 [29,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguqiagenv3.sqlite"          
 [30,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgubeta7.sqlite"             
 [31,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguDKFZ31.sqlite"            
 [32,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/HuO22.sqlite"                
 [33,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/JazaeriMetaData.sqlite"      
 [34,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Norway981.sqlite"            
 [35,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/OperonHumanV3.sqlite"        
 [36,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/PartheenMetaData.sqlite"     
 [37,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/pedbarrayv9.sqlite"          
 [38,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/pedbarrayv10.sqlite"         
 [39,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Roberts2005Annotation.sqlite"
 [40,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/SHDZ.sqlite"                 
 [41,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/POCRCannotation.sqlite"      
 [42,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Hs6UG171.sqlite"             
 [43,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/LAPOINTE.sqlite"             
 [44,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74a.sqlite"               
 [45,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74av2.sqlite"             
 [46,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74b.sqlite"               
 [47,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74bv2.sqlite"             
 [48,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74c.sqlite"               
 [49,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74cv2.sqlite"             
 [50,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/moe430a.sqlite"              
 [51,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/moe430b.sqlite"              
 [52,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mouse4302.sqlite"            
 [53,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mouse430a2.sqlite"           
 [54,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu11ksuba.sqlite"            
 [55,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu11ksubb.sqlite"            
 [56,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksuba.sqlite"            
 [57,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksubb.sqlite"            
 [58,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksubc.sqlite"            
 [59,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4104a.sqlite"            
 [60,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4120a.sqlite"            
 [61,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4121a.sqlite"            
 [62,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4122a.sqlite"            
 [63,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/MmAgilentDesign026655.sqlite"
 [64,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mguatlas5k.sqlite"           
 [65,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mpedbarray.sqlite"           
 [66,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Mu15v1.sqlite"               
 [67,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Mu22v3.sqlite"               
 [68,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rae230a.sqlite"              
 [69,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rae230b.sqlite"              
 [70,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rat2302.sqlite"              
 [71,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34a.sqlite"               
 [72,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34b.sqlite"               
 [73,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34c.sqlite"               
 [74,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rnu34.sqlite"                
 [75,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rtu34.sqlite"                
 [76,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4105a.sqlite"            
 [77,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4130a.sqlite"            
 [78,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4131a.sqlite"            
 [79,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/RnAgilentDesign028282.sqlite"
 [80,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rguatlas4k.sqlite"           
 [81,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/drosgenome1.sqlite"          
 [82,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/drosophila2.sqlite"          
 [83,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/indac.sqlite"                
 [84,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/yeast2.sqlite"               
 [85,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ygs98.sqlite"                
 [86,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ag.sqlite"                   
 [87,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ath1121501.sqlite"           
 [88,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/zebrafish.sqlite"            
 [89,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/canine.sqlite"               
 [90,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/canine2.sqlite"              
 [91,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/celegans.sqlite"             
 [92,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/chicken.sqlite"              
 [93,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/bovine.sqlite"               
 [94,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/porcine.sqlite"              
 [95,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/xlaevis.sqlite"              
 [96,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ecoli2.sqlite"               
 [97,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Hs.eg.sqlite"                 
 [98,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Pf.plasmo.sqlite"             
 [99,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Mm.eg.sqlite"                 
[100,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Rn.eg.sqlite"                 
[101,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Dm.eg.sqlite"                 
[102,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sc.sgd.sqlite"                
[103,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Dr.eg.sqlite"                 
[104,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.EcK12.eg.sqlite"              
[105,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.EcSakai.eg.sqlite"            
[106,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Cf.eg.sqlite"                 
[107,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Bt.eg.sqlite"                 
[108,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ce.eg.sqlite"                 
[109,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ss.eg.sqlite"                 
[110,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Gg.eg.sqlite"                 
[111,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sco.eg.sqlite"                
[112,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sc.eg.sqlite"                 
[113,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Pt.eg.sqlite"                 
[114,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Mmu.eg.sqlite"                
[115,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.At.tair.sqlite"               
[116,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ag.eg.sqlite"                 
[117,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Xl.eg.sqlite"                 
[118,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/GO.sqlite"                        
[119,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/KEGG.sqlite"                 
[120,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Hs.inp.sqlite"                                             
[121,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Mm.inp.sqlite"                                             
[122,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Rn.inp.sqlite"                                             
[123,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Dm.inp.sqlite"                                             
[124,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Sc.inp.sqlite"                                             
[125,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.At.inp.sqlite"                                             
[126,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Dr.inp.sqlite"                                             
[127,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Ce.inp.sqlite"                                             
[128,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/PFAM.sqlite"                      
       AnnObjPrefix            species                  
  [1,] "hcg110"                "Human"                  
  [2,] "hgfocus"               "Human"                  
  [3,] "hgu133a2"              "Human"                  
  [4,] "hgu133a"               "Human"                  
  [5,] "hgu133b"               "Human"                  
  [6,] "hgu133plus2"           "Human"                  
  [7,] "hgu219"                "Human"                  
  [8,] "hgu95a"                "Human"                  
  [9,] "hgu95av2"              "Human"                  
 [10,] "hgu95b"                "Human"                  
 [11,] "hgu95c"                "Human"                  
 [12,] "hgu95d"                "Human"                  
 [13,] "hgu95e"                "Human"                  
 [14,] "hu35ksuba"             "Human"                  
 [15,] "hu35ksubb"             "Human"                  
 [16,] "hu35ksubc"             "Human"                  
 [17,] "hu35ksubd"             "Human"                  
 [18,] "hthgu133a"             "Human"                  
 [19,] "hthgu133b"             "Human"                  
 [20,] "hu6800"                "Human"                  
 [21,] "u133x3p"               "Human"                  
 [22,] "hgug4100a"             "Human"                  
 [23,] "hgug4101a"             "Human"                  
 [24,] "hgug4110b"             "Human"                  
 [25,] "hgug4111a"             "Human"                  
 [26,] "hgug4112a"             "Human"                  
 [27,] "HsAgilentDesign026652" "Human"                  
 [28,] "hguatlas13k"           "Human"                  
 [29,] "hguqiagenv3"           "Human"                  
 [30,] "hgubeta7"              "Human"                  
 [31,] "hguDKFZ31"             "Human"                  
 [32,] "HuO22"                 "Human"                  
 [33,] "JazaeriMetaData"       "Human"                  
 [34,] "Norway981"             "Human"                  
 [35,] "OperonHumanV3"         "Human"                  
 [36,] "PartheenMetaData"      "Human"                  
 [37,] "pedbarrayv9"           "Human"                  
 [38,] "pedbarrayv10"          "Human"                  
 [39,] "Roberts2005Annotation" "Human"                  
 [40,] "SHDZ"                  "Human"                  
 [41,] "POCRCannotation"       "Human"                  
 [42,] "Hs6UG171"              "Human"                  
 [43,] "LAPOINTE"              "Human"                  
 [44,] "mgu74a"                "Mouse"                  
 [45,] "mgu74av2"              "Mouse"                  
 [46,] "mgu74b"                "Mouse"                  
 [47,] "mgu74bv2"              "Mouse"                  
 [48,] "mgu74c"                "Mouse"                  
 [49,] "mgu74cv2"              "Mouse"                  
 [50,] "moe430a"               "Mouse"                  
 [51,] "moe430b"               "Mouse"                  
 [52,] "mouse4302"             "Mouse"                  
 [53,] "mouse430a2"            "Mouse"                  
 [54,] "mu11ksuba"             "Mouse"                  
 [55,] "mu11ksubb"             "Mouse"                  
 [56,] "mu19ksuba"             "Mouse"                  
 [57,] "mu19ksubb"             "Mouse"                  
 [58,] "mu19ksubc"             "Mouse"                  
 [59,] "mgug4104a"             "Mouse"                  
 [60,] "mgug4120a"             "Mouse"                  
 [61,] "mgug4121a"             "Mouse"                  
 [62,] "mgug4122a"             "Mouse"                  
 [63,] "MmAgilentDesign026655" "Mouse"                  
 [64,] "mguatlas5k"            "Mouse"                  
 [65,] "mpedbarray"            "Mouse"                  
 [66,] "Mu15v1"                "Mouse"                  
 [67,] "Mu22v3"                "Mouse"                  
 [68,] "rae230a"               "Rat"                    
 [69,] "rae230b"               "Rat"                    
 [70,] "rat2302"               "Rat"                    
 [71,] "rgu34a"                "Rat"                    
 [72,] "rgu34b"                "Rat"                    
 [73,] "rgu34c"                "Rat"                    
 [74,] "rnu34"                 "Rat"                    
 [75,] "rtu34"                 "Rat"                    
 [76,] "rgug4105a"             "Rat"                    
 [77,] "rgug4130a"             "Rat"                    
 [78,] "rgug4131a"             "Rat"                    
 [79,] "RnAgilentDesign028282" "Rat"                    
 [80,] "rguatlas4k"            "Rat"                    
 [81,] "drosgenome1"           "Fly"                    
 [82,] "drosophila2"           "Fly"                    
 [83,] "indac"                 "Fly"                    
 [84,] "yeast2"                "Yeast"                  
 [85,] "ygs98"                 "Yeast"                  
 [86,] "ag"                    "Arabidopsis"            
 [87,] "ath1121501"            "Arabidopsis"            
 [88,] "zebrafish"             "Zebrafish"              
 [89,] "canine"                "Canine"                 
 [90,] "canine2"               "Canine"                 
 [91,] "celegans"              "Worm"                   
 [92,] "chicken"               "Chicken"                
 [93,] "bovine"                "Bovine"                 
 [94,] "porcine"               "Pig"                    
 [95,] "xlaevis"               "Xenopus"                
 [96,] "ecoli2"                "Escherichia coli"       
 [97,] "org.Hs.eg"             "Human"                  
 [98,] "org.Pf.plasmo"         "Malaria"                
 [99,] "org.Mm.eg"             "Mouse"                  
[100,] "org.Rn.eg"             "Rat"                    
[101,] "org.Dm.eg"             "Fly"                    
[102,] "org.Sc.sgd"            "Yeast"                  
[103,] "org.Dr.eg"             "Zebrafish"              
[104,] "org.EcK12.eg"          "E coli strain K12"      
[105,] "org.EcSakai.eg"        "E coli strain Sakai"    
[106,] "org.Cf.eg"             "Canine"                 
[107,] "org.Bt.eg"             "Bovine"                 
[108,] "org.Ce.eg"             "Worm"                   
[109,] "org.Ss.eg"             "Pig"                    
[110,] "org.Gg.eg"             "Chicken"                
[111,] "org.Sco.eg"            "Streptomyces coelicolor"
[112,] "org.Sc.eg"             "Yeast"                  
[113,] "org.Pt.eg"             "Chimp"                  
[114,] "org.Mmu.eg"            "Rhesus"                 
[115,] "org.At.tair"           "Arabidopsis"            
[116,] "org.Ag.eg"             "Anopheles"              
[117,] "org.Xl.eg"             "Xenopus"                
[118,] "GO"                    NA                       
[119,] "KEGG"                  NA                       
[120,] "hom.Hs.inp"            "Human"                  
[121,] "hom.Mm.inp"            "Mouse"                  
[122,] "hom.Rn.inp"            "Rat"                    
[123,] "hom.Dm.inp"            "Fly"                    
[124,] "hom.Sc.inp"            "Yeast"                  
[125,] "hom.At.inp"            "Arabidopsis"            
[126,] "hom.Dr.inp"            "Zebrafish"              
[127,] "hom.Ce.inp"            "Worm"                   
[128,] "PFAM"                  "Human"                  
       manufacturer                                          
  [1,] "Affymetrix"                                          
  [2,] "Affymetrix"                                          
  [3,] "Affymetrix"                                          
  [4,] "Affymetrix"                                          
  [5,] "Affymetrix"                                          
  [6,] "Affymetrix"                                          
  [7,] "Affymetrix"                                          
  [8,] "Affymetrix"                                          
  [9,] "Affymetrix"                                          
 [10,] "Affymetrix"                                          
 [11,] "Affymetrix"                                          
 [12,] "Affymetrix"                                          
 [13,] "Affymetrix"                                          
 [14,] "Affymetrix"                                          
 [15,] "Affymetrix"                                          
 [16,] "Affymetrix"                                          
 [17,] "Affymetrix"                                          
 [18,] "Affymetrix"                                          
 [19,] "Affymetrix"                                          
 [20,] "Affymetrix"                                          
 [21,] "Affymetrix"                                          
 [22,] "Agilent"                                             
 [23,] "Agilent"                                             
 [24,] "Agilent"                                             
 [25,] "Agilent"                                             
 [26,] "Agilent"                                             
 [27,] "Agilent"                                             
 [28,] "Clontech"                                            
 [29,] "Qiagen"                                              
 [30,] NA                                                    
 [31,] NA                                                    
 [32,] "FHCRC Genomics Shared Resource"                      
 [33,] "National Cancer Institute"                           
 [34,] "Stanford Microarray Database"                        
 [35,] "FHCRC Nelson Lab"                                    
 [36,] "Swegene DNA Microarray Resource Centre, Lund, Sweden"
 [37,] "FHCRC Nelson Lab"                                    
 [38,] "FHCRC Nelson Lab"                                    
 [39,] "Roberts2005Annotation"                               
 [40,] "Stanford Microarray Database"                        
 [41,] "CUSTOM"                                              
 [42,] "CUSTOM"                                              
 [43,] "CUSTOM"                                              
 [44,] "Affymetrix"                                          
 [45,] "Affymetrix"                                          
 [46,] "Affymetrix"                                          
 [47,] "Affymetrix"                                          
 [48,] "Affymetrix"                                          
 [49,] "Affymetrix"                                          
 [50,] "Affymetrix"                                          
 [51,] "Affymetrix"                                          
 [52,] "Affymetrix"                                          
 [53,] "Affymetrix"                                          
 [54,] "Affymetrix"                                          
 [55,] "Affymetrix"                                          
 [56,] "Affymetrix"                                          
 [57,] "Affymetrix"                                          
 [58,] "Affymetrix"                                          
 [59,] "Agilent"                                             
 [60,] "Agilent"                                             
 [61,] "Agilent"                                             
 [62,] "Agilent"                                             
 [63,] "Agilent"                                             
 [64,] "Clontech"                                            
 [65,] "FHCRC Nelson Lab"                                    
 [66,] "FHCRC Genomics Shared Resource"                      
 [67,] "FHCRC Genomics Shared Resource"                      
 [68,] "Affymetrix"                                          
 [69,] "Affymetrix"                                          
 [70,] "Affymetrix"                                          
 [71,] "Affymetrix"                                          
 [72,] "Affymetrix"                                          
 [73,] "Affymetrix"                                          
 [74,] "Affymetrix"                                          
 [75,] "Affymetrix"                                          
 [76,] "Agilent"                                             
 [77,] "Agilent"                                             
 [78,] "Agilent"                                             
 [79,] "Agilent"                                             
 [80,] "Clontech"                                            
 [81,] "Affymetrix"                                          
 [82,] "Affymetrix"                                          
 [83,] "INDAC"                                               
 [84,] "Affymetrix"                                          
 [85,] "Affymetrix"                                          
 [86,] "Affymetrix"                                          
 [87,] "Affymetrix"                                          
 [88,] "Affymetrix"                                          
 [89,] "Affymetrix"                                          
 [90,] "Affymetrix"                                          
 [91,] "Affymetrix"                                          
 [92,] "Affymetrix"                                          
 [93,] "Affymetrix"                                          
 [94,] "Affymetrix"                                          
 [95,] "Affymetrix"                                          
 [96,] "Affymetrix"                                          
 [97,] NA                                                    
 [98,] NA                                                    
 [99,] NA                                                    
[100,] NA                                                    
[101,] NA                                                    
[102,] NA                                                    
[103,] NA                                                    
[104,] NA                                                    
[105,] NA                                                    
[106,] NA                                                    
[107,] NA                                                    
[108,] NA                                                    
[109,] NA                                                    
[110,] NA                                                    
[111,] NA                                                    
[112,] NA                                                    
[113,] NA                                                    
[114,] NA                                                    
[115,] NA                                                    
[116,] NA                                                    
[117,] NA                                                    
[118,] NA                                                    
[119,] NA                                                    
[120,] NA                                                    
[121,] NA                                                    
[122,] NA                                                    
[123,] NA                                                    
[124,] NA                                                    
[125,] NA                                                    
[126,] NA                                                    
[127,] NA                                                    
[128,] NA                                                    
       biocViews                                         
  [1,] NA                                                
  [2,] NA                                                
  [3,] NA                                                
  [4,] NA                                                
  [5,] NA                                                
  [6,] NA                                                
  [7,] NA                                                
  [8,] NA                                                
  [9,] NA                                                
 [10,] NA                                                
 [11,] NA                                                
 [12,] NA                                                
 [13,] NA                                                
 [14,] NA                                                
 [15,] NA                                                
 [16,] NA                                                
 [17,] NA                                                
 [18,] NA                                                
 [19,] NA                                                
 [20,] NA                                                
 [21,] NA                                                
 [22,] NA                                                
 [23,] NA                                                
 [24,] NA                                                
 [25,] NA                                                
 [26,] NA                                                
 [27,] NA                                                
 [28,] NA                                                
 [29,] NA                                                
 [30,] "AnnotationData, CustomArray, Homo_sapiens"       
 [31,] "AnnotationData, CustomArray, Homo_sapiens"       
 [32,] NA                                                
 [33,] NA                                                
 [34,] NA                                                
 [35,] NA                                                
 [36,] NA                                                
 [37,] NA                                                
 [38,] NA                                                
 [39,] NA                                                
 [40,] NA                                                
 [41,] NA                                                
 [42,] NA                                                
 [43,] NA                                                
 [44,] NA                                                
 [45,] NA                                                
 [46,] NA                                                
 [47,] NA                                                
 [48,] NA                                                
 [49,] NA                                                
 [50,] NA                                                
 [51,] NA                                                
 [52,] NA                                                
 [53,] NA                                                
 [54,] NA                                                
 [55,] NA                                                
 [56,] NA                                                
 [57,] NA                                                
 [58,] NA                                                
 [59,] NA                                                
 [60,] NA                                                
 [61,] NA                                                
 [62,] NA                                                
 [63,] NA                                                
 [64,] NA                                                
 [65,] NA                                                
 [66,] NA                                                
 [67,] NA                                                
 [68,] NA                                                
 [69,] NA                                                
 [70,] NA                                                
 [71,] NA                                                
 [72,] NA                                                
 [73,] NA                                                
 [74,] NA                                                
 [75,] NA                                                
 [76,] NA                                                
 [77,] NA                                                
 [78,] NA                                                
 [79,] NA                                                
 [80,] NA                                                
 [81,] NA                                                
 [82,] NA                                                
 [83,] NA                                                
 [84,] NA                                                
 [85,] NA                                                
 [86,] NA                                                
 [87,] NA                                                
 [88,] NA                                                
 [89,] NA                                                
 [90,] NA                                                
 [91,] NA                                                
 [92,] NA                                                
 [93,] NA                                                
 [94,] NA                                                
 [95,] NA                                                
 [96,] NA                                                
 [97,] "AnnotationData, Homo_sapiens, humanLLMappings"   
 [98,] "AnnotationData, Plasmodium_falciparum"           
 [99,] "AnnotationData, Mus_musculus, mouseLLMappings"   
[100,] "AnnotationData, Rattus_norvegicus, ratLLMappings"
[101,] "AnnotationData, Drosophila_melanogaster"         
[102,] "AnnotationData, Saccharomyces_cerevisiae"        
[103,] "AnnotationData, Danio_rerio"                     
[104,] "AnnotationData, Escherichia_coli"                
[105,] "AnnotationData, Escherichia_coli"                
[106,] "AnnotationData, Canis_familiaris"                
[107,] "AnnotationData, Bos_taurus"                      
[108,] "AnnotationData, Caenorhabditis_elegans"          
[109,] "AnnotationData, Sus_scrofa"                      
[110,] "AnnotationData, Gallus_gallus"                   
[111,] "AnnotationData, Streptomyces_coelicolor"         
[112,] "AnnotationData, Saccharomyces_cerevisiae"        
[113,] "AnnotationData, Pan_troglodytes"                 
[114,] "AnnotationData, Macaca_mulatta"                  
[115,] "AnnotationData, Arabidopsis_thaliana"            
[116,] "AnnotationData, Anopheles_gambiae"               
[117,] "AnnotationData, Xenopus_laevis"                  
[118,] "AnnotationData, FunctionalAnnotation"            
[119,] "AnnotationData, FunctionalAnnotation"            
[120,] "AnnotationData, Homo_sapiens"                    
[121,] "AnnotationData, Mus_musculus"                    
[122,] "AnnotationData, Rattus_norvegicus"               
[123,] "AnnotationData, Drosophila_melanogaster"         
[124,] "AnnotationData, Saccharomyces_cerevisiae"        
[125,] "AnnotationData, Arabidopsis_thaliana"            
[126,] "AnnotationData, Danio_rerio"                     
[127,] "AnnotationData, Caenorhabditis_elegans"          
[128,] "AnnotationData"                                  
       Title                                                                         
  [1,] NA                                                                            
  [2,] NA                                                                            
  [3,] NA                                                                            
  [4,] NA                                                                            
  [5,] NA                                                                            
  [6,] NA                                                                            
  [7,] NA                                                                            
  [8,] NA                                                                            
  [9,] NA                                                                            
 [10,] NA                                                                            
 [11,] NA                                                                            
 [12,] NA                                                                            
 [13,] NA                                                                            
 [14,] NA                                                                            
 [15,] NA                                                                            
 [16,] NA                                                                            
 [17,] NA                                                                            
 [18,] NA                                                                            
 [19,] NA                                                                            
 [20,] NA                                                                            
 [21,] NA                                                                            
 [22,] NA                                                                            
 [23,] NA                                                                            
 [24,] NA                                                                            
 [25,] NA                                                                            
 [26,] NA                                                                            
 [27,] NA                                                                            
 [28,] NA                                                                            
 [29,] NA                                                                            
 [30,] NA                                                                            
 [31,] NA                                                                            
 [32,] "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)"                
 [33,] "A data package containing annotation data for JazaeriMetaData"               
 [34,] "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)"      
 [35,] "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)"              
 [36,] "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)"
 [37,] "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)"                  
 [38,] "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)"                
 [39,] "Roberts2005Annotation Annotation Data (Roberts2005Annotation)"               
 [40,] "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)"                
 [41,] "A package containing metadata for POCRC arrays"                              
 [42,] "A package containing metadata for Hs6UG171 arrays"                           
 [43,] "A package containing metadata for LAPOINTE arrays"                           
 [44,] NA                                                                            
 [45,] NA                                                                            
 [46,] NA                                                                            
 [47,] NA                                                                            
 [48,] NA                                                                            
 [49,] NA                                                                            
 [50,] NA                                                                            
 [51,] NA                                                                            
 [52,] NA                                                                            
 [53,] NA                                                                            
 [54,] NA                                                                            
 [55,] NA                                                                            
 [56,] NA                                                                            
 [57,] NA                                                                            
 [58,] NA                                                                            
 [59,] NA                                                                            
 [60,] NA                                                                            
 [61,] NA                                                                            
 [62,] NA                                                                            
 [63,] NA                                                                            
 [64,] NA                                                                            
 [65,] "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)"                    
 [66,] "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)"              
 [67,] "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)"              
 [68,] NA                                                                            
 [69,] NA                                                                            
 [70,] NA                                                                            
 [71,] NA                                                                            
 [72,] NA                                                                            
 [73,] NA                                                                            
 [74,] NA                                                                            
 [75,] NA                                                                            
 [76,] NA                                                                            
 [77,] NA                                                                            
 [78,] NA                                                                            
 [79,] NA                                                                            
 [80,] NA                                                                            
 [81,] NA                                                                            
 [82,] NA                                                                            
 [83,] NA                                                                            
 [84,] NA                                                                            
 [85,] NA                                                                            
 [86,] NA                                                                            
 [87,] NA                                                                            
 [88,] NA                                                                            
 [89,] NA                                                                            
 [90,] NA                                                                            
 [91,] NA                                                                            
 [92,] NA                                                                            
 [93,] NA                                                                            
 [94,] NA                                                                            
 [95,] NA                                                                            
 [96,] NA                                                                            
 [97,] NA                                                                            
 [98,] NA                                                                            
 [99,] NA                                                                            
[100,] NA                                                                            
[101,] NA                                                                            
[102,] NA                                                                            
[103,] NA                                                                            
[104,] NA                                                                            
[105,] NA                                                                            
[106,] NA                                                                            
[107,] NA                                                                            
[108,] NA                                                                            
[109,] NA                                                                            
[110,] NA                                                                            
[111,] NA                                                                            
[112,] NA                                                                            
[113,] NA                                                                            
[114,] NA                                                                            
[115,] NA                                                                            
[116,] NA                                                                            
[117,] NA                                                                            
[118,] "A set of annotation maps describing the entire Gene Ontology"                
[119,] "A set of annotation maps for KEGG"                                           
[120,] "Homology information for Homo Sapiens from Inparanoid"                       
[121,] "Homology information for Mus musculus from Inparanoid"                       
[122,] "Homology information for Rattus norvegicus from Inparanoid"                  
[123,] "Homology information for Drosophila melanogaster from Inparanoid"            
[124,] "Homology information for Saccharomyces cerevisiae from Inparanoid"           
[125,] "Homology information for Arabidopsis thaliana from Inparanoid"               
[126,] "Homology information for Danio rerio from Inparanoid"                        
[127,] "Homology information for Caenorhabditis elegans from Inparanoid"             
[128,] "A set of protein ID mappings for PFAM"                                       
       AnnObjTarget             
  [1,] NA                       
  [2,] NA                       
  [3,] NA                       
  [4,] NA                       
  [5,] NA                       
  [6,] NA                       
  [7,] NA                       
  [8,] NA                       
  [9,] NA                       
 [10,] NA                       
 [11,] NA                       
 [12,] NA                       
 [13,] NA                       
 [14,] NA                       
 [15,] NA                       
 [16,] NA                       
 [17,] NA                       
 [18,] NA                       
 [19,] NA                       
 [20,] NA                       
 [21,] NA                       
 [22,] NA                       
 [23,] NA                       
 [24,] NA                       
 [25,] NA                       
 [26,] NA                       
 [27,] NA                       
 [28,] NA                       
 [29,] NA                       
 [30,] NA                       
 [31,] NA                       
 [32,] NA                       
 [33,] NA                       
 [34,] NA                       
 [35,] NA                       
 [36,] NA                       
 [37,] NA                       
 [38,] NA                       
 [39,] NA                       
 [40,] NA                       
 [41,] NA                       
 [42,] NA                       
 [43,] NA                       
 [44,] NA                       
 [45,] NA                       
 [46,] NA                       
 [47,] NA                       
 [48,] NA                       
 [49,] NA                       
 [50,] NA                       
 [51,] NA                       
 [52,] NA                       
 [53,] NA                       
 [54,] NA                       
 [55,] NA                       
 [56,] NA                       
 [57,] NA                       
 [58,] NA                       
 [59,] NA                       
 [60,] NA                       
 [61,] NA                       
 [62,] NA                       
 [63,] NA                       
 [64,] NA                       
 [65,] NA                       
 [66,] NA                       
 [67,] NA                       
 [68,] NA                       
 [69,] NA                       
 [70,] NA                       
 [71,] NA                       
 [72,] NA                       
 [73,] NA                       
 [74,] NA                       
 [75,] NA                       
 [76,] NA                       
 [77,] NA                       
 [78,] NA                       
 [79,] NA                       
 [80,] NA                       
 [81,] NA                       
 [82,] NA                       
 [83,] NA                       
 [84,] NA                       
 [85,] NA                       
 [86,] NA                       
 [87,] NA                       
 [88,] NA                       
 [89,] NA                       
 [90,] NA                       
 [91,] NA                       
 [92,] NA                       
 [93,] NA                       
 [94,] NA                       
 [95,] NA                       
 [96,] NA                       
 [97,] "Human"                  
 [98,] "Malaria"                
 [99,] "Mouse"                  
[100,] "Rat"                    
[101,] "Fly"                    
[102,] "Yeast"                  
[103,] "Zebrafish"              
[104,] "E coli"                 
[105,] "E coli"                 
[106,] "Canine"                 
[107,] "Bovine"                 
[108,] "Worm"                   
[109,] "Pig"                    
[110,] "Chicken"                
[111,] "Streptomyces coelicolor"
[112,] "Yeast"                  
[113,] "Chimp"                  
[114,] "Rhesus"                 
[115,] "Arabidopsis"            
[116,] "Anopheles"              
[117,] "Xenopus"                
[118,] "GO"                     
[119,] "KEGG"                   
[120,] "Human"                  
[121,] "Mouse"                  
[122,] "Rat"                    
[123,] "Fly"                    
[124,] "Yeast"                  
[125,] "Arabidopsis"            
[126,] "Zebrafish"              
[127,] "Worm"                   
[128,] "Human"                  

AnnotationForge documentation built on Aug. 6, 2018, 2 a.m.