AnnDbPkg-maker: Create an SQLite-based annotation package
In AnnotationForge: Tools for building SQLite-based annotation data packages
Description
Usage
Arguments
See Also
Examples
Description
Create an SQLite-based annotation package from an SQLite file.
Usage
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makeAnnDbPkg(x, dbfile, dest_dir=".", no.man=FALSE, ...)
loadAnnDbPkgIndex(file)
Arguments
x
A AnnDbPkgSeed object, a list, a string or a regular expression.
dbfile
The path to the SQLite containing the annotation data for the package
to build.
dest_dir
The directory where the package will be created.
file
The path to a DCF file containing the list of annotation packages
to build.
no.man
If TRUE then no man page is included in the package.
...
Extra args used for extra filtering.
See Also
AnnDbPkg-checker
Examples
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## With a "AnnDbPkgSeed" object:
seed <- new("AnnDbPkgSeed",
Package="hgu133a2.db",
Version="0.0.99",
PkgTemplate="HUMANCHIP.DB",
AnnObjPrefix="hgu133a2"
)
if (FALSE)
makeAnnDbPkg(seed, "path/to/hgu133a2.sqlite")
## With package names:
## (Note that in this case makeAnnDbPkg() will use the package descriptions
## found in the master index file ANNDBPKG-INDEX.TXT located in the
## AnnotationDbi package.)
if (FALSE)
makeAnnDbPkg(c("hgu95av2.db", "hgu133a2.db"))
## A character vector of length 1 is treated as a regular expression:
if (FALSE)
makeAnnDbPkg("hgu.*")
## To make all the packages described in the master index:
if (FALSE)
makeAnnDbPkg("")
## Extra args can be used to narrow down the roaster of packages to make:
if (FALSE) {
makeAnnDbPkg("", PkgTemplate="HUMANCHIP.DB", manufacturer="Affymetrix")
makeAnnDbPkg(".*[3k]\\.db", species=c("Mouse", "Rat"))
}
## The master index file ANNDBPKG-INDEX.TXT can be loaded with:
loadAnnDbPkgIndex()
Example output
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Package Version PkgTemplate
[1,] "hcg110.db" "3.2.3" "NCBICHIP.DB"
[2,] "hgfocus.db" "3.2.3" "NCBICHIP.DB"
[3,] "hgu133a2.db" "3.2.3" "NCBICHIP.DB"
[4,] "hgu133a.db" "3.2.3" "NCBICHIP.DB"
[5,] "hgu133b.db" "3.2.3" "NCBICHIP.DB"
[6,] "hgu133plus2.db" "3.2.3" "NCBICHIP.DB"
[7,] "hgu219.db" "3.2.3" "NCBICHIP.DB"
[8,] "hgu95a.db" "3.2.3" "NCBICHIP.DB"
[9,] "hgu95av2.db" "3.2.3" "NCBICHIP.DB"
[10,] "hgu95b.db" "3.2.3" "NCBICHIP.DB"
[11,] "hgu95c.db" "3.2.3" "NCBICHIP.DB"
[12,] "hgu95d.db" "3.2.3" "NCBICHIP.DB"
[13,] "hgu95e.db" "3.2.3" "NCBICHIP.DB"
[14,] "hu35ksuba.db" "3.2.3" "NCBICHIP.DB"
[15,] "hu35ksubb.db" "3.2.3" "NCBICHIP.DB"
[16,] "hu35ksubc.db" "3.2.3" "NCBICHIP.DB"
[17,] "hu35ksubd.db" "3.2.3" "NCBICHIP.DB"
[18,] "hthgu133a.db" "3.2.3" "NCBICHIP.DB"
[19,] "hthgu133b.db" "3.2.3" "NCBICHIP.DB"
[20,] "hu6800.db" "3.2.3" "NCBICHIP.DB"
[21,] "u133x3p.db" "3.2.3" "NCBICHIP.DB"
[22,] "hgug4100a.db" "3.2.3" "NCBICHIP.DB"
[23,] "hgug4101a.db" "3.2.3" "NCBICHIP.DB"
[24,] "hgug4110b.db" "3.2.3" "NCBICHIP.DB"
[25,] "hgug4111a.db" "3.2.3" "NCBICHIP.DB"
[26,] "hgug4112a.db" "3.2.3" "NCBICHIP.DB"
[27,] "HsAgilentDesign026652.db" "3.2.3" "NCBICHIP.DB"
[28,] "hguatlas13k.db" "3.2.3" "NCBICHIP.DB"
[29,] "hguqiagenv3.db" "3.2.3" "NCBICHIP.DB"
[30,] "hgubeta7.db" "3.2.3" "NCBICHIP.DB"
[31,] "hguDKFZ31.db" "3.2.3" "NCBICHIP.DB"
[32,] "HuO22.db" "3.2.3" "NCBICHIP.DB"
[33,] "JazaeriMetaData.db" "3.2.3" "NCBICHIP.DB"
[34,] "Norway981.db" "3.2.3" "NCBICHIP.DB"
[35,] "OperonHumanV3.db" "3.2.3" "NCBICHIP.DB"
[36,] "PartheenMetaData.db" "3.2.3" "NCBICHIP.DB"
[37,] "pedbarrayv9.db" "3.2.3" "NCBICHIP.DB"
[38,] "pedbarrayv10.db" "3.2.3" "NCBICHIP.DB"
[39,] "Roberts2005Annotation.db" "3.2.3" "NCBICHIP.DB"
[40,] "SHDZ.db" "3.2.3" "NCBICHIP.DB"
[41,] "POCRCannotation.db" "3.2.3" "NCBICHIP.DB"
[42,] "Hs6UG171.db" "3.2.3" "NCBICHIP.DB"
[43,] "LAPOINTE.db" "3.2.3" "NCBICHIP.DB"
[44,] "mgu74a.db" "3.2.3" "NCBICHIP.DB"
[45,] "mgu74av2.db" "3.2.3" "NCBICHIP.DB"
[46,] "mgu74b.db" "3.2.3" "NCBICHIP.DB"
[47,] "mgu74bv2.db" "3.2.3" "NCBICHIP.DB"
[48,] "mgu74c.db" "3.2.3" "NCBICHIP.DB"
[49,] "mgu74cv2.db" "3.2.3" "NCBICHIP.DB"
[50,] "moe430a.db" "3.2.3" "NCBICHIP.DB"
[51,] "moe430b.db" "3.2.3" "NCBICHIP.DB"
[52,] "mouse4302.db" "3.2.3" "NCBICHIP.DB"
[53,] "mouse430a2.db" "3.2.3" "NCBICHIP.DB"
[54,] "mu11ksuba.db" "3.2.3" "NCBICHIP.DB"
[55,] "mu11ksubb.db" "3.2.3" "NCBICHIP.DB"
[56,] "mu19ksuba.db" "3.2.3" "NCBICHIP.DB"
[57,] "mu19ksubb.db" "3.2.3" "NCBICHIP.DB"
[58,] "mu19ksubc.db" "3.2.3" "NCBICHIP.DB"
[59,] "mgug4104a.db" "3.2.3" "NCBICHIP.DB"
[60,] "mgug4120a.db" "3.2.3" "NCBICHIP.DB"
[61,] "mgug4121a.db" "3.2.3" "NCBICHIP.DB"
[62,] "mgug4122a.db" "3.2.3" "NCBICHIP.DB"
[63,] "MmAgilentDesign026655.db" "3.2.3" "NCBICHIP.DB"
[64,] "mguatlas5k.db" "3.2.3" "NCBICHIP.DB"
[65,] "mpedbarray.db" "3.2.3" "NCBICHIP.DB"
[66,] "Mu15v1.db" "3.2.3" "NCBICHIP.DB"
[67,] "Mu22v3.db" "3.2.3" "NCBICHIP.DB"
[68,] "rae230a.db" "3.2.3" "NCBICHIP.DB"
[69,] "rae230b.db" "3.2.3" "NCBICHIP.DB"
[70,] "rat2302.db" "3.2.3" "NCBICHIP.DB"
[71,] "rgu34a.db" "3.2.3" "NCBICHIP.DB"
[72,] "rgu34b.db" "3.2.3" "NCBICHIP.DB"
[73,] "rgu34c.db" "3.2.3" "NCBICHIP.DB"
[74,] "rnu34.db" "3.2.3" "NCBICHIP.DB"
[75,] "rtu34.db" "3.2.3" "NCBICHIP.DB"
[76,] "rgug4105a.db" "3.2.3" "NCBICHIP.DB"
[77,] "rgug4130a.db" "3.2.3" "NCBICHIP.DB"
[78,] "rgug4131a.db" "3.2.3" "NCBICHIP.DB"
[79,] "RnAgilentDesign028282.db" "3.2.3" "NCBICHIP.DB"
[80,] "rguatlas4k.db" "3.2.3" "NCBICHIP.DB"
[81,] "drosgenome1.db" "3.2.3" "NCBICHIP.DB"
[82,] "drosophila2.db" "3.2.3" "NCBICHIP.DB"
[83,] "indac.db" "3.2.3" "NCBICHIP.DB"
[84,] "yeast2.db" "3.2.3" "YEASTCHIP.DB"
[85,] "ygs98.db" "3.2.3" "YEASTCHIP.DB"
[86,] "ag.db" "3.2.3" "ARABIDOPSISCHIP.DB"
[87,] "ath1121501.db" "3.2.3" "ARABIDOPSISCHIP.DB"
[88,] "zebrafish.db" "3.2.3" "NCBICHIP.DB"
[89,] "canine.db" "3.2.3" "NCBICHIP.DB"
[90,] "canine2.db" "3.2.3" "NCBICHIP.DB"
[91,] "celegans.db" "3.2.3" "NCBICHIP.DB"
[92,] "chicken.db" "3.2.3" "NCBICHIP.DB"
[93,] "bovine.db" "3.2.3" "NCBICHIP.DB"
[94,] "porcine.db" "3.2.3" "NCBICHIP.DB"
[95,] "xlaevis.db" "3.2.3" "NCBICHIP.DB"
[96,] "ecoli2.db" "3.2.3" "NCBICHIP.DB"
[97,] "org.Hs.eg.db" "3.4.1" "NCBIORG.DB"
[98,] "org.Pf.plasmo.db" "3.4.1" "MALARIA.DB"
[99,] "org.Mm.eg.db" "3.4.1" "NCBIORG.DB"
[100,] "org.Rn.eg.db" "3.4.1" "NCBIORG.DB"
[101,] "org.Dm.eg.db" "3.4.1" "NCBIORG.DB"
[102,] "org.Sc.sgd.db" "3.4.1" "YEAST.DB"
[103,] "org.Dr.eg.db" "3.4.1" "NCBIORG.DB"
[104,] "org.EcK12.eg.db" "3.4.1" "NCBIORG.DB"
[105,] "org.EcSakai.eg.db" "3.4.1" "NCBIORG.DB"
[106,] "org.Cf.eg.db" "3.4.1" "NCBIORG.DB"
[107,] "org.Bt.eg.db" "3.4.1" "NCBIORG.DB"
[108,] "org.Ce.eg.db" "3.4.1" "NCBIORG.DB"
[109,] "org.Ss.eg.db" "3.4.1" "NCBIORG.DB"
[110,] "org.Gg.eg.db" "3.4.1" "NCBIORG.DB"
[111,] "org.Sco.eg.db" "3.4.1" "COELICOLOR.DB"
[112,] "org.Sc.eg.db" "3.4.1" "YEASTNCBI.DB"
[113,] "org.Pt.eg.db" "3.4.1" "NCBIORG.DB"
[114,] "org.Mmu.eg.db" "3.4.1" "NCBIORG.DB"
[115,] "org.At.tair.db" "3.4.1" "ARABIDOPSIS.DB"
[116,] "org.Ag.eg.db" "3.4.1" "NCBIORG.DB"
[117,] "org.Xl.eg.db" "3.4.1" "NCBIORG.DB"
[118,] "GO.db" "3.4.1" "GO.DB"
[119,] "KEGG.db" "3.2.3" "KEGG.DB"
[120,] "hom.Hs.inp.db" "3.2.3" "INPARANOID.DB"
[121,] "hom.Mm.inp.db" "3.2.3" "INPARANOID.DB"
[122,] "hom.Rn.inp.db" "3.2.3" "INPARANOID.DB"
[123,] "hom.Dm.inp.db" "3.2.3" "INPARANOID.DB"
[124,] "hom.Sc.inp.db" "3.2.3" "INPARANOID.DB"
[125,] "hom.At.inp.db" "3.2.3" "INPARANOID.DB"
[126,] "hom.Dr.inp.db" "3.2.3" "INPARANOID.DB"
[127,] "hom.Ce.inp.db" "3.2.3" "INPARANOID.DB"
[128,] "PFAM.db" "3.4.1" "PFAM.DB"
DBfile
[1,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hcg110.sqlite"
[2,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgfocus.sqlite"
[3,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133a2.sqlite"
[4,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133a.sqlite"
[5,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133b.sqlite"
[6,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133plus2.sqlite"
[7,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu219.sqlite"
[8,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95a.sqlite"
[9,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95av2.sqlite"
[10,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95b.sqlite"
[11,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95c.sqlite"
[12,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95d.sqlite"
[13,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95e.sqlite"
[14,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksuba.sqlite"
[15,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubb.sqlite"
[16,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubc.sqlite"
[17,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubd.sqlite"
[18,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hthgu133a.sqlite"
[19,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hthgu133b.sqlite"
[20,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu6800.sqlite"
[21,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/u133x3p.sqlite"
[22,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4100a.sqlite"
[23,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4101a.sqlite"
[24,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4110b.sqlite"
[25,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4111a.sqlite"
[26,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4112a.sqlite"
[27,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/HsAgilentDesign026652.sqlite"
[28,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguatlas13k.sqlite"
[29,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguqiagenv3.sqlite"
[30,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgubeta7.sqlite"
[31,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguDKFZ31.sqlite"
[32,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/HuO22.sqlite"
[33,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/JazaeriMetaData.sqlite"
[34,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Norway981.sqlite"
[35,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/OperonHumanV3.sqlite"
[36,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/PartheenMetaData.sqlite"
[37,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/pedbarrayv9.sqlite"
[38,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/pedbarrayv10.sqlite"
[39,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Roberts2005Annotation.sqlite"
[40,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/SHDZ.sqlite"
[41,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/POCRCannotation.sqlite"
[42,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Hs6UG171.sqlite"
[43,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/LAPOINTE.sqlite"
[44,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74a.sqlite"
[45,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74av2.sqlite"
[46,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74b.sqlite"
[47,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74bv2.sqlite"
[48,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74c.sqlite"
[49,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74cv2.sqlite"
[50,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/moe430a.sqlite"
[51,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/moe430b.sqlite"
[52,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mouse4302.sqlite"
[53,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mouse430a2.sqlite"
[54,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu11ksuba.sqlite"
[55,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu11ksubb.sqlite"
[56,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksuba.sqlite"
[57,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksubb.sqlite"
[58,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksubc.sqlite"
[59,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4104a.sqlite"
[60,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4120a.sqlite"
[61,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4121a.sqlite"
[62,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4122a.sqlite"
[63,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/MmAgilentDesign026655.sqlite"
[64,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mguatlas5k.sqlite"
[65,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mpedbarray.sqlite"
[66,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Mu15v1.sqlite"
[67,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Mu22v3.sqlite"
[68,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rae230a.sqlite"
[69,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rae230b.sqlite"
[70,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rat2302.sqlite"
[71,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34a.sqlite"
[72,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34b.sqlite"
[73,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34c.sqlite"
[74,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rnu34.sqlite"
[75,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rtu34.sqlite"
[76,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4105a.sqlite"
[77,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4130a.sqlite"
[78,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4131a.sqlite"
[79,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/RnAgilentDesign028282.sqlite"
[80,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rguatlas4k.sqlite"
[81,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/drosgenome1.sqlite"
[82,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/drosophila2.sqlite"
[83,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/indac.sqlite"
[84,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/yeast2.sqlite"
[85,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ygs98.sqlite"
[86,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ag.sqlite"
[87,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ath1121501.sqlite"
[88,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/zebrafish.sqlite"
[89,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/canine.sqlite"
[90,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/canine2.sqlite"
[91,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/celegans.sqlite"
[92,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/chicken.sqlite"
[93,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/bovine.sqlite"
[94,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/porcine.sqlite"
[95,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/xlaevis.sqlite"
[96,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ecoli2.sqlite"
[97,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Hs.eg.sqlite"
[98,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Pf.plasmo.sqlite"
[99,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Mm.eg.sqlite"
[100,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Rn.eg.sqlite"
[101,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Dm.eg.sqlite"
[102,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sc.sgd.sqlite"
[103,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Dr.eg.sqlite"
[104,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.EcK12.eg.sqlite"
[105,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.EcSakai.eg.sqlite"
[106,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Cf.eg.sqlite"
[107,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Bt.eg.sqlite"
[108,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ce.eg.sqlite"
[109,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ss.eg.sqlite"
[110,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Gg.eg.sqlite"
[111,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sco.eg.sqlite"
[112,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sc.eg.sqlite"
[113,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Pt.eg.sqlite"
[114,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Mmu.eg.sqlite"
[115,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.At.tair.sqlite"
[116,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ag.eg.sqlite"
[117,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Xl.eg.sqlite"
[118,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/GO.sqlite"
[119,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/KEGG.sqlite"
[120,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Hs.inp.sqlite"
[121,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Mm.inp.sqlite"
[122,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Rn.inp.sqlite"
[123,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Dm.inp.sqlite"
[124,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Sc.inp.sqlite"
[125,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.At.inp.sqlite"
[126,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Dr.inp.sqlite"
[127,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Ce.inp.sqlite"
[128,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/PFAM.sqlite"
AnnObjPrefix species
[1,] "hcg110" "Human"
[2,] "hgfocus" "Human"
[3,] "hgu133a2" "Human"
[4,] "hgu133a" "Human"
[5,] "hgu133b" "Human"
[6,] "hgu133plus2" "Human"
[7,] "hgu219" "Human"
[8,] "hgu95a" "Human"
[9,] "hgu95av2" "Human"
[10,] "hgu95b" "Human"
[11,] "hgu95c" "Human"
[12,] "hgu95d" "Human"
[13,] "hgu95e" "Human"
[14,] "hu35ksuba" "Human"
[15,] "hu35ksubb" "Human"
[16,] "hu35ksubc" "Human"
[17,] "hu35ksubd" "Human"
[18,] "hthgu133a" "Human"
[19,] "hthgu133b" "Human"
[20,] "hu6800" "Human"
[21,] "u133x3p" "Human"
[22,] "hgug4100a" "Human"
[23,] "hgug4101a" "Human"
[24,] "hgug4110b" "Human"
[25,] "hgug4111a" "Human"
[26,] "hgug4112a" "Human"
[27,] "HsAgilentDesign026652" "Human"
[28,] "hguatlas13k" "Human"
[29,] "hguqiagenv3" "Human"
[30,] "hgubeta7" "Human"
[31,] "hguDKFZ31" "Human"
[32,] "HuO22" "Human"
[33,] "JazaeriMetaData" "Human"
[34,] "Norway981" "Human"
[35,] "OperonHumanV3" "Human"
[36,] "PartheenMetaData" "Human"
[37,] "pedbarrayv9" "Human"
[38,] "pedbarrayv10" "Human"
[39,] "Roberts2005Annotation" "Human"
[40,] "SHDZ" "Human"
[41,] "POCRCannotation" "Human"
[42,] "Hs6UG171" "Human"
[43,] "LAPOINTE" "Human"
[44,] "mgu74a" "Mouse"
[45,] "mgu74av2" "Mouse"
[46,] "mgu74b" "Mouse"
[47,] "mgu74bv2" "Mouse"
[48,] "mgu74c" "Mouse"
[49,] "mgu74cv2" "Mouse"
[50,] "moe430a" "Mouse"
[51,] "moe430b" "Mouse"
[52,] "mouse4302" "Mouse"
[53,] "mouse430a2" "Mouse"
[54,] "mu11ksuba" "Mouse"
[55,] "mu11ksubb" "Mouse"
[56,] "mu19ksuba" "Mouse"
[57,] "mu19ksubb" "Mouse"
[58,] "mu19ksubc" "Mouse"
[59,] "mgug4104a" "Mouse"
[60,] "mgug4120a" "Mouse"
[61,] "mgug4121a" "Mouse"
[62,] "mgug4122a" "Mouse"
[63,] "MmAgilentDesign026655" "Mouse"
[64,] "mguatlas5k" "Mouse"
[65,] "mpedbarray" "Mouse"
[66,] "Mu15v1" "Mouse"
[67,] "Mu22v3" "Mouse"
[68,] "rae230a" "Rat"
[69,] "rae230b" "Rat"
[70,] "rat2302" "Rat"
[71,] "rgu34a" "Rat"
[72,] "rgu34b" "Rat"
[73,] "rgu34c" "Rat"
[74,] "rnu34" "Rat"
[75,] "rtu34" "Rat"
[76,] "rgug4105a" "Rat"
[77,] "rgug4130a" "Rat"
[78,] "rgug4131a" "Rat"
[79,] "RnAgilentDesign028282" "Rat"
[80,] "rguatlas4k" "Rat"
[81,] "drosgenome1" "Fly"
[82,] "drosophila2" "Fly"
[83,] "indac" "Fly"
[84,] "yeast2" "Yeast"
[85,] "ygs98" "Yeast"
[86,] "ag" "Arabidopsis"
[87,] "ath1121501" "Arabidopsis"
[88,] "zebrafish" "Zebrafish"
[89,] "canine" "Canine"
[90,] "canine2" "Canine"
[91,] "celegans" "Worm"
[92,] "chicken" "Chicken"
[93,] "bovine" "Bovine"
[94,] "porcine" "Pig"
[95,] "xlaevis" "Xenopus"
[96,] "ecoli2" "Escherichia coli"
[97,] "org.Hs.eg" "Human"
[98,] "org.Pf.plasmo" "Malaria"
[99,] "org.Mm.eg" "Mouse"
[100,] "org.Rn.eg" "Rat"
[101,] "org.Dm.eg" "Fly"
[102,] "org.Sc.sgd" "Yeast"
[103,] "org.Dr.eg" "Zebrafish"
[104,] "org.EcK12.eg" "E coli strain K12"
[105,] "org.EcSakai.eg" "E coli strain Sakai"
[106,] "org.Cf.eg" "Canine"
[107,] "org.Bt.eg" "Bovine"
[108,] "org.Ce.eg" "Worm"
[109,] "org.Ss.eg" "Pig"
[110,] "org.Gg.eg" "Chicken"
[111,] "org.Sco.eg" "Streptomyces coelicolor"
[112,] "org.Sc.eg" "Yeast"
[113,] "org.Pt.eg" "Chimp"
[114,] "org.Mmu.eg" "Rhesus"
[115,] "org.At.tair" "Arabidopsis"
[116,] "org.Ag.eg" "Anopheles"
[117,] "org.Xl.eg" "Xenopus"
[118,] "GO" NA
[119,] "KEGG" NA
[120,] "hom.Hs.inp" "Human"
[121,] "hom.Mm.inp" "Mouse"
[122,] "hom.Rn.inp" "Rat"
[123,] "hom.Dm.inp" "Fly"
[124,] "hom.Sc.inp" "Yeast"
[125,] "hom.At.inp" "Arabidopsis"
[126,] "hom.Dr.inp" "Zebrafish"
[127,] "hom.Ce.inp" "Worm"
[128,] "PFAM" "Human"
manufacturer
[1,] "Affymetrix"
[2,] "Affymetrix"
[3,] "Affymetrix"
[4,] "Affymetrix"
[5,] "Affymetrix"
[6,] "Affymetrix"
[7,] "Affymetrix"
[8,] "Affymetrix"
[9,] "Affymetrix"
[10,] "Affymetrix"
[11,] "Affymetrix"
[12,] "Affymetrix"
[13,] "Affymetrix"
[14,] "Affymetrix"
[15,] "Affymetrix"
[16,] "Affymetrix"
[17,] "Affymetrix"
[18,] "Affymetrix"
[19,] "Affymetrix"
[20,] "Affymetrix"
[21,] "Affymetrix"
[22,] "Agilent"
[23,] "Agilent"
[24,] "Agilent"
[25,] "Agilent"
[26,] "Agilent"
[27,] "Agilent"
[28,] "Clontech"
[29,] "Qiagen"
[30,] NA
[31,] NA
[32,] "FHCRC Genomics Shared Resource"
[33,] "National Cancer Institute"
[34,] "Stanford Microarray Database"
[35,] "FHCRC Nelson Lab"
[36,] "Swegene DNA Microarray Resource Centre, Lund, Sweden"
[37,] "FHCRC Nelson Lab"
[38,] "FHCRC Nelson Lab"
[39,] "Roberts2005Annotation"
[40,] "Stanford Microarray Database"
[41,] "CUSTOM"
[42,] "CUSTOM"
[43,] "CUSTOM"
[44,] "Affymetrix"
[45,] "Affymetrix"
[46,] "Affymetrix"
[47,] "Affymetrix"
[48,] "Affymetrix"
[49,] "Affymetrix"
[50,] "Affymetrix"
[51,] "Affymetrix"
[52,] "Affymetrix"
[53,] "Affymetrix"
[54,] "Affymetrix"
[55,] "Affymetrix"
[56,] "Affymetrix"
[57,] "Affymetrix"
[58,] "Affymetrix"
[59,] "Agilent"
[60,] "Agilent"
[61,] "Agilent"
[62,] "Agilent"
[63,] "Agilent"
[64,] "Clontech"
[65,] "FHCRC Nelson Lab"
[66,] "FHCRC Genomics Shared Resource"
[67,] "FHCRC Genomics Shared Resource"
[68,] "Affymetrix"
[69,] "Affymetrix"
[70,] "Affymetrix"
[71,] "Affymetrix"
[72,] "Affymetrix"
[73,] "Affymetrix"
[74,] "Affymetrix"
[75,] "Affymetrix"
[76,] "Agilent"
[77,] "Agilent"
[78,] "Agilent"
[79,] "Agilent"
[80,] "Clontech"
[81,] "Affymetrix"
[82,] "Affymetrix"
[83,] "INDAC"
[84,] "Affymetrix"
[85,] "Affymetrix"
[86,] "Affymetrix"
[87,] "Affymetrix"
[88,] "Affymetrix"
[89,] "Affymetrix"
[90,] "Affymetrix"
[91,] "Affymetrix"
[92,] "Affymetrix"
[93,] "Affymetrix"
[94,] "Affymetrix"
[95,] "Affymetrix"
[96,] "Affymetrix"
[97,] NA
[98,] NA
[99,] NA
[100,] NA
[101,] NA
[102,] NA
[103,] NA
[104,] NA
[105,] NA
[106,] NA
[107,] NA
[108,] NA
[109,] NA
[110,] NA
[111,] NA
[112,] NA
[113,] NA
[114,] NA
[115,] NA
[116,] NA
[117,] NA
[118,] NA
[119,] NA
[120,] NA
[121,] NA
[122,] NA
[123,] NA
[124,] NA
[125,] NA
[126,] NA
[127,] NA
[128,] NA
biocViews
[1,] NA
[2,] NA
[3,] NA
[4,] NA
[5,] NA
[6,] NA
[7,] NA
[8,] NA
[9,] NA
[10,] NA
[11,] NA
[12,] NA
[13,] NA
[14,] NA
[15,] NA
[16,] NA
[17,] NA
[18,] NA
[19,] NA
[20,] NA
[21,] NA
[22,] NA
[23,] NA
[24,] NA
[25,] NA
[26,] NA
[27,] NA
[28,] NA
[29,] NA
[30,] "AnnotationData, CustomArray, Homo_sapiens"
[31,] "AnnotationData, CustomArray, Homo_sapiens"
[32,] NA
[33,] NA
[34,] NA
[35,] NA
[36,] NA
[37,] NA
[38,] NA
[39,] NA
[40,] NA
[41,] NA
[42,] NA
[43,] NA
[44,] NA
[45,] NA
[46,] NA
[47,] NA
[48,] NA
[49,] NA
[50,] NA
[51,] NA
[52,] NA
[53,] NA
[54,] NA
[55,] NA
[56,] NA
[57,] NA
[58,] NA
[59,] NA
[60,] NA
[61,] NA
[62,] NA
[63,] NA
[64,] NA
[65,] NA
[66,] NA
[67,] NA
[68,] NA
[69,] NA
[70,] NA
[71,] NA
[72,] NA
[73,] NA
[74,] NA
[75,] NA
[76,] NA
[77,] NA
[78,] NA
[79,] NA
[80,] NA
[81,] NA
[82,] NA
[83,] NA
[84,] NA
[85,] NA
[86,] NA
[87,] NA
[88,] NA
[89,] NA
[90,] NA
[91,] NA
[92,] NA
[93,] NA
[94,] NA
[95,] NA
[96,] NA
[97,] "AnnotationData, Homo_sapiens, humanLLMappings"
[98,] "AnnotationData, Plasmodium_falciparum"
[99,] "AnnotationData, Mus_musculus, mouseLLMappings"
[100,] "AnnotationData, Rattus_norvegicus, ratLLMappings"
[101,] "AnnotationData, Drosophila_melanogaster"
[102,] "AnnotationData, Saccharomyces_cerevisiae"
[103,] "AnnotationData, Danio_rerio"
[104,] "AnnotationData, Escherichia_coli"
[105,] "AnnotationData, Escherichia_coli"
[106,] "AnnotationData, Canis_familiaris"
[107,] "AnnotationData, Bos_taurus"
[108,] "AnnotationData, Caenorhabditis_elegans"
[109,] "AnnotationData, Sus_scrofa"
[110,] "AnnotationData, Gallus_gallus"
[111,] "AnnotationData, Streptomyces_coelicolor"
[112,] "AnnotationData, Saccharomyces_cerevisiae"
[113,] "AnnotationData, Pan_troglodytes"
[114,] "AnnotationData, Macaca_mulatta"
[115,] "AnnotationData, Arabidopsis_thaliana"
[116,] "AnnotationData, Anopheles_gambiae"
[117,] "AnnotationData, Xenopus_laevis"
[118,] "AnnotationData, FunctionalAnnotation"
[119,] "AnnotationData, FunctionalAnnotation"
[120,] "AnnotationData, Homo_sapiens"
[121,] "AnnotationData, Mus_musculus"
[122,] "AnnotationData, Rattus_norvegicus"
[123,] "AnnotationData, Drosophila_melanogaster"
[124,] "AnnotationData, Saccharomyces_cerevisiae"
[125,] "AnnotationData, Arabidopsis_thaliana"
[126,] "AnnotationData, Danio_rerio"
[127,] "AnnotationData, Caenorhabditis_elegans"
[128,] "AnnotationData"
Title
[1,] NA
[2,] NA
[3,] NA
[4,] NA
[5,] NA
[6,] NA
[7,] NA
[8,] NA
[9,] NA
[10,] NA
[11,] NA
[12,] NA
[13,] NA
[14,] NA
[15,] NA
[16,] NA
[17,] NA
[18,] NA
[19,] NA
[20,] NA
[21,] NA
[22,] NA
[23,] NA
[24,] NA
[25,] NA
[26,] NA
[27,] NA
[28,] NA
[29,] NA
[30,] NA
[31,] NA
[32,] "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)"
[33,] "A data package containing annotation data for JazaeriMetaData"
[34,] "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)"
[35,] "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)"
[36,] "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)"
[37,] "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)"
[38,] "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)"
[39,] "Roberts2005Annotation Annotation Data (Roberts2005Annotation)"
[40,] "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)"
[41,] "A package containing metadata for POCRC arrays"
[42,] "A package containing metadata for Hs6UG171 arrays"
[43,] "A package containing metadata for LAPOINTE arrays"
[44,] NA
[45,] NA
[46,] NA
[47,] NA
[48,] NA
[49,] NA
[50,] NA
[51,] NA
[52,] NA
[53,] NA
[54,] NA
[55,] NA
[56,] NA
[57,] NA
[58,] NA
[59,] NA
[60,] NA
[61,] NA
[62,] NA
[63,] NA
[64,] NA
[65,] "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)"
[66,] "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)"
[67,] "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)"
[68,] NA
[69,] NA
[70,] NA
[71,] NA
[72,] NA
[73,] NA
[74,] NA
[75,] NA
[76,] NA
[77,] NA
[78,] NA
[79,] NA
[80,] NA
[81,] NA
[82,] NA
[83,] NA
[84,] NA
[85,] NA
[86,] NA
[87,] NA
[88,] NA
[89,] NA
[90,] NA
[91,] NA
[92,] NA
[93,] NA
[94,] NA
[95,] NA
[96,] NA
[97,] NA
[98,] NA
[99,] NA
[100,] NA
[101,] NA
[102,] NA
[103,] NA
[104,] NA
[105,] NA
[106,] NA
[107,] NA
[108,] NA
[109,] NA
[110,] NA
[111,] NA
[112,] NA
[113,] NA
[114,] NA
[115,] NA
[116,] NA
[117,] NA
[118,] "A set of annotation maps describing the entire Gene Ontology"
[119,] "A set of annotation maps for KEGG"
[120,] "Homology information for Homo Sapiens from Inparanoid"
[121,] "Homology information for Mus musculus from Inparanoid"
[122,] "Homology information for Rattus norvegicus from Inparanoid"
[123,] "Homology information for Drosophila melanogaster from Inparanoid"
[124,] "Homology information for Saccharomyces cerevisiae from Inparanoid"
[125,] "Homology information for Arabidopsis thaliana from Inparanoid"
[126,] "Homology information for Danio rerio from Inparanoid"
[127,] "Homology information for Caenorhabditis elegans from Inparanoid"
[128,] "A set of protein ID mappings for PFAM"
AnnObjTarget
[1,] NA
[2,] NA
[3,] NA
[4,] NA
[5,] NA
[6,] NA
[7,] NA
[8,] NA
[9,] NA
[10,] NA
[11,] NA
[12,] NA
[13,] NA
[14,] NA
[15,] NA
[16,] NA
[17,] NA
[18,] NA
[19,] NA
[20,] NA
[21,] NA
[22,] NA
[23,] NA
[24,] NA
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[97,] "Human"
[98,] "Malaria"
[99,] "Mouse"
[100,] "Rat"
[101,] "Fly"
[102,] "Yeast"
[103,] "Zebrafish"
[104,] "E coli"
[105,] "E coli"
[106,] "Canine"
[107,] "Bovine"
[108,] "Worm"
[109,] "Pig"
[110,] "Chicken"
[111,] "Streptomyces coelicolor"
[112,] "Yeast"
[113,] "Chimp"
[114,] "Rhesus"
[115,] "Arabidopsis"
[116,] "Anopheles"
[117,] "Xenopus"
[118,] "GO"
[119,] "KEGG"
[120,] "Human"
[121,] "Mouse"
[122,] "Rat"
[123,] "Fly"
[124,] "Yeast"
[125,] "Arabidopsis"
[126,] "Zebrafish"
[127,] "Worm"
[128,] "Human"
AnnotationForge documentation built on Nov. 8, 2020, 8:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments See Also Examples
Description
Create an SQLite-based annotation package from an SQLite file.
Usage
1 2 | makeAnnDbPkg(x, dbfile, dest_dir=".", no.man=FALSE, ...)
loadAnnDbPkgIndex(file)
|
Arguments
x |
A AnnDbPkgSeed object, a list, a string or a regular expression. |
dbfile |
The path to the SQLite containing the annotation data for the package to build. |
dest_dir |
The directory where the package will be created. |
file |
The path to a DCF file containing the list of annotation packages to build. |
no.man |
If |
... |
Extra args used for extra filtering. |
See Also
AnnDbPkg-checker
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | ## With a "AnnDbPkgSeed" object:
seed <- new("AnnDbPkgSeed",
Package="hgu133a2.db",
Version="0.0.99",
PkgTemplate="HUMANCHIP.DB",
AnnObjPrefix="hgu133a2"
)
if (FALSE)
makeAnnDbPkg(seed, "path/to/hgu133a2.sqlite")
## With package names:
## (Note that in this case makeAnnDbPkg() will use the package descriptions
## found in the master index file ANNDBPKG-INDEX.TXT located in the
## AnnotationDbi package.)
if (FALSE)
makeAnnDbPkg(c("hgu95av2.db", "hgu133a2.db"))
## A character vector of length 1 is treated as a regular expression:
if (FALSE)
makeAnnDbPkg("hgu.*")
## To make all the packages described in the master index:
if (FALSE)
makeAnnDbPkg("")
## Extra args can be used to narrow down the roaster of packages to make:
if (FALSE) {
makeAnnDbPkg("", PkgTemplate="HUMANCHIP.DB", manufacturer="Affymetrix")
makeAnnDbPkg(".*[3k]\\.db", species=c("Mouse", "Rat"))
}
## The master index file ANNDBPKG-INDEX.TXT can be loaded with:
loadAnnDbPkgIndex()
|
Example output
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Package Version PkgTemplate
[1,] "hcg110.db" "3.2.3" "NCBICHIP.DB"
[2,] "hgfocus.db" "3.2.3" "NCBICHIP.DB"
[3,] "hgu133a2.db" "3.2.3" "NCBICHIP.DB"
[4,] "hgu133a.db" "3.2.3" "NCBICHIP.DB"
[5,] "hgu133b.db" "3.2.3" "NCBICHIP.DB"
[6,] "hgu133plus2.db" "3.2.3" "NCBICHIP.DB"
[7,] "hgu219.db" "3.2.3" "NCBICHIP.DB"
[8,] "hgu95a.db" "3.2.3" "NCBICHIP.DB"
[9,] "hgu95av2.db" "3.2.3" "NCBICHIP.DB"
[10,] "hgu95b.db" "3.2.3" "NCBICHIP.DB"
[11,] "hgu95c.db" "3.2.3" "NCBICHIP.DB"
[12,] "hgu95d.db" "3.2.3" "NCBICHIP.DB"
[13,] "hgu95e.db" "3.2.3" "NCBICHIP.DB"
[14,] "hu35ksuba.db" "3.2.3" "NCBICHIP.DB"
[15,] "hu35ksubb.db" "3.2.3" "NCBICHIP.DB"
[16,] "hu35ksubc.db" "3.2.3" "NCBICHIP.DB"
[17,] "hu35ksubd.db" "3.2.3" "NCBICHIP.DB"
[18,] "hthgu133a.db" "3.2.3" "NCBICHIP.DB"
[19,] "hthgu133b.db" "3.2.3" "NCBICHIP.DB"
[20,] "hu6800.db" "3.2.3" "NCBICHIP.DB"
[21,] "u133x3p.db" "3.2.3" "NCBICHIP.DB"
[22,] "hgug4100a.db" "3.2.3" "NCBICHIP.DB"
[23,] "hgug4101a.db" "3.2.3" "NCBICHIP.DB"
[24,] "hgug4110b.db" "3.2.3" "NCBICHIP.DB"
[25,] "hgug4111a.db" "3.2.3" "NCBICHIP.DB"
[26,] "hgug4112a.db" "3.2.3" "NCBICHIP.DB"
[27,] "HsAgilentDesign026652.db" "3.2.3" "NCBICHIP.DB"
[28,] "hguatlas13k.db" "3.2.3" "NCBICHIP.DB"
[29,] "hguqiagenv3.db" "3.2.3" "NCBICHIP.DB"
[30,] "hgubeta7.db" "3.2.3" "NCBICHIP.DB"
[31,] "hguDKFZ31.db" "3.2.3" "NCBICHIP.DB"
[32,] "HuO22.db" "3.2.3" "NCBICHIP.DB"
[33,] "JazaeriMetaData.db" "3.2.3" "NCBICHIP.DB"
[34,] "Norway981.db" "3.2.3" "NCBICHIP.DB"
[35,] "OperonHumanV3.db" "3.2.3" "NCBICHIP.DB"
[36,] "PartheenMetaData.db" "3.2.3" "NCBICHIP.DB"
[37,] "pedbarrayv9.db" "3.2.3" "NCBICHIP.DB"
[38,] "pedbarrayv10.db" "3.2.3" "NCBICHIP.DB"
[39,] "Roberts2005Annotation.db" "3.2.3" "NCBICHIP.DB"
[40,] "SHDZ.db" "3.2.3" "NCBICHIP.DB"
[41,] "POCRCannotation.db" "3.2.3" "NCBICHIP.DB"
[42,] "Hs6UG171.db" "3.2.3" "NCBICHIP.DB"
[43,] "LAPOINTE.db" "3.2.3" "NCBICHIP.DB"
[44,] "mgu74a.db" "3.2.3" "NCBICHIP.DB"
[45,] "mgu74av2.db" "3.2.3" "NCBICHIP.DB"
[46,] "mgu74b.db" "3.2.3" "NCBICHIP.DB"
[47,] "mgu74bv2.db" "3.2.3" "NCBICHIP.DB"
[48,] "mgu74c.db" "3.2.3" "NCBICHIP.DB"
[49,] "mgu74cv2.db" "3.2.3" "NCBICHIP.DB"
[50,] "moe430a.db" "3.2.3" "NCBICHIP.DB"
[51,] "moe430b.db" "3.2.3" "NCBICHIP.DB"
[52,] "mouse4302.db" "3.2.3" "NCBICHIP.DB"
[53,] "mouse430a2.db" "3.2.3" "NCBICHIP.DB"
[54,] "mu11ksuba.db" "3.2.3" "NCBICHIP.DB"
[55,] "mu11ksubb.db" "3.2.3" "NCBICHIP.DB"
[56,] "mu19ksuba.db" "3.2.3" "NCBICHIP.DB"
[57,] "mu19ksubb.db" "3.2.3" "NCBICHIP.DB"
[58,] "mu19ksubc.db" "3.2.3" "NCBICHIP.DB"
[59,] "mgug4104a.db" "3.2.3" "NCBICHIP.DB"
[60,] "mgug4120a.db" "3.2.3" "NCBICHIP.DB"
[61,] "mgug4121a.db" "3.2.3" "NCBICHIP.DB"
[62,] "mgug4122a.db" "3.2.3" "NCBICHIP.DB"
[63,] "MmAgilentDesign026655.db" "3.2.3" "NCBICHIP.DB"
[64,] "mguatlas5k.db" "3.2.3" "NCBICHIP.DB"
[65,] "mpedbarray.db" "3.2.3" "NCBICHIP.DB"
[66,] "Mu15v1.db" "3.2.3" "NCBICHIP.DB"
[67,] "Mu22v3.db" "3.2.3" "NCBICHIP.DB"
[68,] "rae230a.db" "3.2.3" "NCBICHIP.DB"
[69,] "rae230b.db" "3.2.3" "NCBICHIP.DB"
[70,] "rat2302.db" "3.2.3" "NCBICHIP.DB"
[71,] "rgu34a.db" "3.2.3" "NCBICHIP.DB"
[72,] "rgu34b.db" "3.2.3" "NCBICHIP.DB"
[73,] "rgu34c.db" "3.2.3" "NCBICHIP.DB"
[74,] "rnu34.db" "3.2.3" "NCBICHIP.DB"
[75,] "rtu34.db" "3.2.3" "NCBICHIP.DB"
[76,] "rgug4105a.db" "3.2.3" "NCBICHIP.DB"
[77,] "rgug4130a.db" "3.2.3" "NCBICHIP.DB"
[78,] "rgug4131a.db" "3.2.3" "NCBICHIP.DB"
[79,] "RnAgilentDesign028282.db" "3.2.3" "NCBICHIP.DB"
[80,] "rguatlas4k.db" "3.2.3" "NCBICHIP.DB"
[81,] "drosgenome1.db" "3.2.3" "NCBICHIP.DB"
[82,] "drosophila2.db" "3.2.3" "NCBICHIP.DB"
[83,] "indac.db" "3.2.3" "NCBICHIP.DB"
[84,] "yeast2.db" "3.2.3" "YEASTCHIP.DB"
[85,] "ygs98.db" "3.2.3" "YEASTCHIP.DB"
[86,] "ag.db" "3.2.3" "ARABIDOPSISCHIP.DB"
[87,] "ath1121501.db" "3.2.3" "ARABIDOPSISCHIP.DB"
[88,] "zebrafish.db" "3.2.3" "NCBICHIP.DB"
[89,] "canine.db" "3.2.3" "NCBICHIP.DB"
[90,] "canine2.db" "3.2.3" "NCBICHIP.DB"
[91,] "celegans.db" "3.2.3" "NCBICHIP.DB"
[92,] "chicken.db" "3.2.3" "NCBICHIP.DB"
[93,] "bovine.db" "3.2.3" "NCBICHIP.DB"
[94,] "porcine.db" "3.2.3" "NCBICHIP.DB"
[95,] "xlaevis.db" "3.2.3" "NCBICHIP.DB"
[96,] "ecoli2.db" "3.2.3" "NCBICHIP.DB"
[97,] "org.Hs.eg.db" "3.4.1" "NCBIORG.DB"
[98,] "org.Pf.plasmo.db" "3.4.1" "MALARIA.DB"
[99,] "org.Mm.eg.db" "3.4.1" "NCBIORG.DB"
[100,] "org.Rn.eg.db" "3.4.1" "NCBIORG.DB"
[101,] "org.Dm.eg.db" "3.4.1" "NCBIORG.DB"
[102,] "org.Sc.sgd.db" "3.4.1" "YEAST.DB"
[103,] "org.Dr.eg.db" "3.4.1" "NCBIORG.DB"
[104,] "org.EcK12.eg.db" "3.4.1" "NCBIORG.DB"
[105,] "org.EcSakai.eg.db" "3.4.1" "NCBIORG.DB"
[106,] "org.Cf.eg.db" "3.4.1" "NCBIORG.DB"
[107,] "org.Bt.eg.db" "3.4.1" "NCBIORG.DB"
[108,] "org.Ce.eg.db" "3.4.1" "NCBIORG.DB"
[109,] "org.Ss.eg.db" "3.4.1" "NCBIORG.DB"
[110,] "org.Gg.eg.db" "3.4.1" "NCBIORG.DB"
[111,] "org.Sco.eg.db" "3.4.1" "COELICOLOR.DB"
[112,] "org.Sc.eg.db" "3.4.1" "YEASTNCBI.DB"
[113,] "org.Pt.eg.db" "3.4.1" "NCBIORG.DB"
[114,] "org.Mmu.eg.db" "3.4.1" "NCBIORG.DB"
[115,] "org.At.tair.db" "3.4.1" "ARABIDOPSIS.DB"
[116,] "org.Ag.eg.db" "3.4.1" "NCBIORG.DB"
[117,] "org.Xl.eg.db" "3.4.1" "NCBIORG.DB"
[118,] "GO.db" "3.4.1" "GO.DB"
[119,] "KEGG.db" "3.2.3" "KEGG.DB"
[120,] "hom.Hs.inp.db" "3.2.3" "INPARANOID.DB"
[121,] "hom.Mm.inp.db" "3.2.3" "INPARANOID.DB"
[122,] "hom.Rn.inp.db" "3.2.3" "INPARANOID.DB"
[123,] "hom.Dm.inp.db" "3.2.3" "INPARANOID.DB"
[124,] "hom.Sc.inp.db" "3.2.3" "INPARANOID.DB"
[125,] "hom.At.inp.db" "3.2.3" "INPARANOID.DB"
[126,] "hom.Dr.inp.db" "3.2.3" "INPARANOID.DB"
[127,] "hom.Ce.inp.db" "3.2.3" "INPARANOID.DB"
[128,] "PFAM.db" "3.4.1" "PFAM.DB"
DBfile
[1,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hcg110.sqlite"
[2,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgfocus.sqlite"
[3,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133a2.sqlite"
[4,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133a.sqlite"
[5,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133b.sqlite"
[6,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu133plus2.sqlite"
[7,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu219.sqlite"
[8,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95a.sqlite"
[9,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95av2.sqlite"
[10,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95b.sqlite"
[11,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95c.sqlite"
[12,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95d.sqlite"
[13,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgu95e.sqlite"
[14,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksuba.sqlite"
[15,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubb.sqlite"
[16,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubc.sqlite"
[17,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu35ksubd.sqlite"
[18,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hthgu133a.sqlite"
[19,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hthgu133b.sqlite"
[20,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hu6800.sqlite"
[21,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/u133x3p.sqlite"
[22,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4100a.sqlite"
[23,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4101a.sqlite"
[24,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4110b.sqlite"
[25,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4111a.sqlite"
[26,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgug4112a.sqlite"
[27,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/HsAgilentDesign026652.sqlite"
[28,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguatlas13k.sqlite"
[29,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguqiagenv3.sqlite"
[30,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hgubeta7.sqlite"
[31,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/hguDKFZ31.sqlite"
[32,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/HuO22.sqlite"
[33,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/JazaeriMetaData.sqlite"
[34,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Norway981.sqlite"
[35,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/OperonHumanV3.sqlite"
[36,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/PartheenMetaData.sqlite"
[37,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/pedbarrayv9.sqlite"
[38,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/pedbarrayv10.sqlite"
[39,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Roberts2005Annotation.sqlite"
[40,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/SHDZ.sqlite"
[41,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/POCRCannotation.sqlite"
[42,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Hs6UG171.sqlite"
[43,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/LAPOINTE.sqlite"
[44,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74a.sqlite"
[45,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74av2.sqlite"
[46,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74b.sqlite"
[47,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74bv2.sqlite"
[48,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74c.sqlite"
[49,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgu74cv2.sqlite"
[50,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/moe430a.sqlite"
[51,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/moe430b.sqlite"
[52,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mouse4302.sqlite"
[53,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mouse430a2.sqlite"
[54,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu11ksuba.sqlite"
[55,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu11ksubb.sqlite"
[56,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksuba.sqlite"
[57,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksubb.sqlite"
[58,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mu19ksubc.sqlite"
[59,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4104a.sqlite"
[60,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4120a.sqlite"
[61,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4121a.sqlite"
[62,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mgug4122a.sqlite"
[63,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/MmAgilentDesign026655.sqlite"
[64,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mguatlas5k.sqlite"
[65,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/mpedbarray.sqlite"
[66,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Mu15v1.sqlite"
[67,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/Mu22v3.sqlite"
[68,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rae230a.sqlite"
[69,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rae230b.sqlite"
[70,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rat2302.sqlite"
[71,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34a.sqlite"
[72,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34b.sqlite"
[73,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgu34c.sqlite"
[74,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rnu34.sqlite"
[75,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rtu34.sqlite"
[76,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4105a.sqlite"
[77,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4130a.sqlite"
[78,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rgug4131a.sqlite"
[79,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/RnAgilentDesign028282.sqlite"
[80,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/rguatlas4k.sqlite"
[81,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/drosgenome1.sqlite"
[82,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/drosophila2.sqlite"
[83,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/indac.sqlite"
[84,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/yeast2.sqlite"
[85,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ygs98.sqlite"
[86,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ag.sqlite"
[87,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ath1121501.sqlite"
[88,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/zebrafish.sqlite"
[89,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/canine.sqlite"
[90,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/canine2.sqlite"
[91,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/celegans.sqlite"
[92,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/chicken.sqlite"
[93,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/bovine.sqlite"
[94,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/porcine.sqlite"
[95,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/xlaevis.sqlite"
[96,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/ecoli2.sqlite"
[97,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Hs.eg.sqlite"
[98,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Pf.plasmo.sqlite"
[99,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Mm.eg.sqlite"
[100,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Rn.eg.sqlite"
[101,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Dm.eg.sqlite"
[102,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sc.sgd.sqlite"
[103,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Dr.eg.sqlite"
[104,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.EcK12.eg.sqlite"
[105,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.EcSakai.eg.sqlite"
[106,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Cf.eg.sqlite"
[107,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Bt.eg.sqlite"
[108,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ce.eg.sqlite"
[109,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ss.eg.sqlite"
[110,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Gg.eg.sqlite"
[111,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sco.eg.sqlite"
[112,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Sc.eg.sqlite"
[113,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Pt.eg.sqlite"
[114,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Mmu.eg.sqlite"
[115,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.At.tair.sqlite"
[116,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Ag.eg.sqlite"
[117,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/org.Xl.eg.sqlite"
[118,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/GO.sqlite"
[119,] "/home/ubuntu/cpb_anno/AnnotationBuildPipeline/newPipe/old_code/2015.10.07/KEGG.sqlite"
[120,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Hs.inp.sqlite"
[121,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Mm.inp.sqlite"
[122,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Rn.inp.sqlite"
[123,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Dm.inp.sqlite"
[124,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Sc.inp.sqlite"
[125,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.At.inp.sqlite"
[126,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Dr.inp.sqlite"
[127,] "/mnt/cpb_anno/mcarlson/sanctionedSqlite/hom.Ce.inp.sqlite"
[128,] "/home/ubuntu/BioconductorAnnotationPipeline/newPipe/sanctionedSqlite/PFAM.sqlite"
AnnObjPrefix species
[1,] "hcg110" "Human"
[2,] "hgfocus" "Human"
[3,] "hgu133a2" "Human"
[4,] "hgu133a" "Human"
[5,] "hgu133b" "Human"
[6,] "hgu133plus2" "Human"
[7,] "hgu219" "Human"
[8,] "hgu95a" "Human"
[9,] "hgu95av2" "Human"
[10,] "hgu95b" "Human"
[11,] "hgu95c" "Human"
[12,] "hgu95d" "Human"
[13,] "hgu95e" "Human"
[14,] "hu35ksuba" "Human"
[15,] "hu35ksubb" "Human"
[16,] "hu35ksubc" "Human"
[17,] "hu35ksubd" "Human"
[18,] "hthgu133a" "Human"
[19,] "hthgu133b" "Human"
[20,] "hu6800" "Human"
[21,] "u133x3p" "Human"
[22,] "hgug4100a" "Human"
[23,] "hgug4101a" "Human"
[24,] "hgug4110b" "Human"
[25,] "hgug4111a" "Human"
[26,] "hgug4112a" "Human"
[27,] "HsAgilentDesign026652" "Human"
[28,] "hguatlas13k" "Human"
[29,] "hguqiagenv3" "Human"
[30,] "hgubeta7" "Human"
[31,] "hguDKFZ31" "Human"
[32,] "HuO22" "Human"
[33,] "JazaeriMetaData" "Human"
[34,] "Norway981" "Human"
[35,] "OperonHumanV3" "Human"
[36,] "PartheenMetaData" "Human"
[37,] "pedbarrayv9" "Human"
[38,] "pedbarrayv10" "Human"
[39,] "Roberts2005Annotation" "Human"
[40,] "SHDZ" "Human"
[41,] "POCRCannotation" "Human"
[42,] "Hs6UG171" "Human"
[43,] "LAPOINTE" "Human"
[44,] "mgu74a" "Mouse"
[45,] "mgu74av2" "Mouse"
[46,] "mgu74b" "Mouse"
[47,] "mgu74bv2" "Mouse"
[48,] "mgu74c" "Mouse"
[49,] "mgu74cv2" "Mouse"
[50,] "moe430a" "Mouse"
[51,] "moe430b" "Mouse"
[52,] "mouse4302" "Mouse"
[53,] "mouse430a2" "Mouse"
[54,] "mu11ksuba" "Mouse"
[55,] "mu11ksubb" "Mouse"
[56,] "mu19ksuba" "Mouse"
[57,] "mu19ksubb" "Mouse"
[58,] "mu19ksubc" "Mouse"
[59,] "mgug4104a" "Mouse"
[60,] "mgug4120a" "Mouse"
[61,] "mgug4121a" "Mouse"
[62,] "mgug4122a" "Mouse"
[63,] "MmAgilentDesign026655" "Mouse"
[64,] "mguatlas5k" "Mouse"
[65,] "mpedbarray" "Mouse"
[66,] "Mu15v1" "Mouse"
[67,] "Mu22v3" "Mouse"
[68,] "rae230a" "Rat"
[69,] "rae230b" "Rat"
[70,] "rat2302" "Rat"
[71,] "rgu34a" "Rat"
[72,] "rgu34b" "Rat"
[73,] "rgu34c" "Rat"
[74,] "rnu34" "Rat"
[75,] "rtu34" "Rat"
[76,] "rgug4105a" "Rat"
[77,] "rgug4130a" "Rat"
[78,] "rgug4131a" "Rat"
[79,] "RnAgilentDesign028282" "Rat"
[80,] "rguatlas4k" "Rat"
[81,] "drosgenome1" "Fly"
[82,] "drosophila2" "Fly"
[83,] "indac" "Fly"
[84,] "yeast2" "Yeast"
[85,] "ygs98" "Yeast"
[86,] "ag" "Arabidopsis"
[87,] "ath1121501" "Arabidopsis"
[88,] "zebrafish" "Zebrafish"
[89,] "canine" "Canine"
[90,] "canine2" "Canine"
[91,] "celegans" "Worm"
[92,] "chicken" "Chicken"
[93,] "bovine" "Bovine"
[94,] "porcine" "Pig"
[95,] "xlaevis" "Xenopus"
[96,] "ecoli2" "Escherichia coli"
[97,] "org.Hs.eg" "Human"
[98,] "org.Pf.plasmo" "Malaria"
[99,] "org.Mm.eg" "Mouse"
[100,] "org.Rn.eg" "Rat"
[101,] "org.Dm.eg" "Fly"
[102,] "org.Sc.sgd" "Yeast"
[103,] "org.Dr.eg" "Zebrafish"
[104,] "org.EcK12.eg" "E coli strain K12"
[105,] "org.EcSakai.eg" "E coli strain Sakai"
[106,] "org.Cf.eg" "Canine"
[107,] "org.Bt.eg" "Bovine"
[108,] "org.Ce.eg" "Worm"
[109,] "org.Ss.eg" "Pig"
[110,] "org.Gg.eg" "Chicken"
[111,] "org.Sco.eg" "Streptomyces coelicolor"
[112,] "org.Sc.eg" "Yeast"
[113,] "org.Pt.eg" "Chimp"
[114,] "org.Mmu.eg" "Rhesus"
[115,] "org.At.tair" "Arabidopsis"
[116,] "org.Ag.eg" "Anopheles"
[117,] "org.Xl.eg" "Xenopus"
[118,] "GO" NA
[119,] "KEGG" NA
[120,] "hom.Hs.inp" "Human"
[121,] "hom.Mm.inp" "Mouse"
[122,] "hom.Rn.inp" "Rat"
[123,] "hom.Dm.inp" "Fly"
[124,] "hom.Sc.inp" "Yeast"
[125,] "hom.At.inp" "Arabidopsis"
[126,] "hom.Dr.inp" "Zebrafish"
[127,] "hom.Ce.inp" "Worm"
[128,] "PFAM" "Human"
manufacturer
[1,] "Affymetrix"
[2,] "Affymetrix"
[3,] "Affymetrix"
[4,] "Affymetrix"
[5,] "Affymetrix"
[6,] "Affymetrix"
[7,] "Affymetrix"
[8,] "Affymetrix"
[9,] "Affymetrix"
[10,] "Affymetrix"
[11,] "Affymetrix"
[12,] "Affymetrix"
[13,] "Affymetrix"
[14,] "Affymetrix"
[15,] "Affymetrix"
[16,] "Affymetrix"
[17,] "Affymetrix"
[18,] "Affymetrix"
[19,] "Affymetrix"
[20,] "Affymetrix"
[21,] "Affymetrix"
[22,] "Agilent"
[23,] "Agilent"
[24,] "Agilent"
[25,] "Agilent"
[26,] "Agilent"
[27,] "Agilent"
[28,] "Clontech"
[29,] "Qiagen"
[30,] NA
[31,] NA
[32,] "FHCRC Genomics Shared Resource"
[33,] "National Cancer Institute"
[34,] "Stanford Microarray Database"
[35,] "FHCRC Nelson Lab"
[36,] "Swegene DNA Microarray Resource Centre, Lund, Sweden"
[37,] "FHCRC Nelson Lab"
[38,] "FHCRC Nelson Lab"
[39,] "Roberts2005Annotation"
[40,] "Stanford Microarray Database"
[41,] "CUSTOM"
[42,] "CUSTOM"
[43,] "CUSTOM"
[44,] "Affymetrix"
[45,] "Affymetrix"
[46,] "Affymetrix"
[47,] "Affymetrix"
[48,] "Affymetrix"
[49,] "Affymetrix"
[50,] "Affymetrix"
[51,] "Affymetrix"
[52,] "Affymetrix"
[53,] "Affymetrix"
[54,] "Affymetrix"
[55,] "Affymetrix"
[56,] "Affymetrix"
[57,] "Affymetrix"
[58,] "Affymetrix"
[59,] "Agilent"
[60,] "Agilent"
[61,] "Agilent"
[62,] "Agilent"
[63,] "Agilent"
[64,] "Clontech"
[65,] "FHCRC Nelson Lab"
[66,] "FHCRC Genomics Shared Resource"
[67,] "FHCRC Genomics Shared Resource"
[68,] "Affymetrix"
[69,] "Affymetrix"
[70,] "Affymetrix"
[71,] "Affymetrix"
[72,] "Affymetrix"
[73,] "Affymetrix"
[74,] "Affymetrix"
[75,] "Affymetrix"
[76,] "Agilent"
[77,] "Agilent"
[78,] "Agilent"
[79,] "Agilent"
[80,] "Clontech"
[81,] "Affymetrix"
[82,] "Affymetrix"
[83,] "INDAC"
[84,] "Affymetrix"
[85,] "Affymetrix"
[86,] "Affymetrix"
[87,] "Affymetrix"
[88,] "Affymetrix"
[89,] "Affymetrix"
[90,] "Affymetrix"
[91,] "Affymetrix"
[92,] "Affymetrix"
[93,] "Affymetrix"
[94,] "Affymetrix"
[95,] "Affymetrix"
[96,] "Affymetrix"
[97,] NA
[98,] NA
[99,] NA
[100,] NA
[101,] NA
[102,] NA
[103,] NA
[104,] NA
[105,] NA
[106,] NA
[107,] NA
[108,] NA
[109,] NA
[110,] NA
[111,] NA
[112,] NA
[113,] NA
[114,] NA
[115,] NA
[116,] NA
[117,] NA
[118,] NA
[119,] NA
[120,] NA
[121,] NA
[122,] NA
[123,] NA
[124,] NA
[125,] NA
[126,] NA
[127,] NA
[128,] NA
biocViews
[1,] NA
[2,] NA
[3,] NA
[4,] NA
[5,] NA
[6,] NA
[7,] NA
[8,] NA
[9,] NA
[10,] NA
[11,] NA
[12,] NA
[13,] NA
[14,] NA
[15,] NA
[16,] NA
[17,] NA
[18,] NA
[19,] NA
[20,] NA
[21,] NA
[22,] NA
[23,] NA
[24,] NA
[25,] NA
[26,] NA
[27,] NA
[28,] NA
[29,] NA
[30,] "AnnotationData, CustomArray, Homo_sapiens"
[31,] "AnnotationData, CustomArray, Homo_sapiens"
[32,] NA
[33,] NA
[34,] NA
[35,] NA
[36,] NA
[37,] NA
[38,] NA
[39,] NA
[40,] NA
[41,] NA
[42,] NA
[43,] NA
[44,] NA
[45,] NA
[46,] NA
[47,] NA
[48,] NA
[49,] NA
[50,] NA
[51,] NA
[52,] NA
[53,] NA
[54,] NA
[55,] NA
[56,] NA
[57,] NA
[58,] NA
[59,] NA
[60,] NA
[61,] NA
[62,] NA
[63,] NA
[64,] NA
[65,] NA
[66,] NA
[67,] NA
[68,] NA
[69,] NA
[70,] NA
[71,] NA
[72,] NA
[73,] NA
[74,] NA
[75,] NA
[76,] NA
[77,] NA
[78,] NA
[79,] NA
[80,] NA
[81,] NA
[82,] NA
[83,] NA
[84,] NA
[85,] NA
[86,] NA
[87,] NA
[88,] NA
[89,] NA
[90,] NA
[91,] NA
[92,] NA
[93,] NA
[94,] NA
[95,] NA
[96,] NA
[97,] "AnnotationData, Homo_sapiens, humanLLMappings"
[98,] "AnnotationData, Plasmodium_falciparum"
[99,] "AnnotationData, Mus_musculus, mouseLLMappings"
[100,] "AnnotationData, Rattus_norvegicus, ratLLMappings"
[101,] "AnnotationData, Drosophila_melanogaster"
[102,] "AnnotationData, Saccharomyces_cerevisiae"
[103,] "AnnotationData, Danio_rerio"
[104,] "AnnotationData, Escherichia_coli"
[105,] "AnnotationData, Escherichia_coli"
[106,] "AnnotationData, Canis_familiaris"
[107,] "AnnotationData, Bos_taurus"
[108,] "AnnotationData, Caenorhabditis_elegans"
[109,] "AnnotationData, Sus_scrofa"
[110,] "AnnotationData, Gallus_gallus"
[111,] "AnnotationData, Streptomyces_coelicolor"
[112,] "AnnotationData, Saccharomyces_cerevisiae"
[113,] "AnnotationData, Pan_troglodytes"
[114,] "AnnotationData, Macaca_mulatta"
[115,] "AnnotationData, Arabidopsis_thaliana"
[116,] "AnnotationData, Anopheles_gambiae"
[117,] "AnnotationData, Xenopus_laevis"
[118,] "AnnotationData, FunctionalAnnotation"
[119,] "AnnotationData, FunctionalAnnotation"
[120,] "AnnotationData, Homo_sapiens"
[121,] "AnnotationData, Mus_musculus"
[122,] "AnnotationData, Rattus_norvegicus"
[123,] "AnnotationData, Drosophila_melanogaster"
[124,] "AnnotationData, Saccharomyces_cerevisiae"
[125,] "AnnotationData, Arabidopsis_thaliana"
[126,] "AnnotationData, Danio_rerio"
[127,] "AnnotationData, Caenorhabditis_elegans"
[128,] "AnnotationData"
Title
[1,] NA
[2,] NA
[3,] NA
[4,] NA
[5,] NA
[6,] NA
[7,] NA
[8,] NA
[9,] NA
[10,] NA
[11,] NA
[12,] NA
[13,] NA
[14,] NA
[15,] NA
[16,] NA
[17,] NA
[18,] NA
[19,] NA
[20,] NA
[21,] NA
[22,] NA
[23,] NA
[24,] NA
[25,] NA
[26,] NA
[27,] NA
[28,] NA
[29,] NA
[30,] NA
[31,] NA
[32,] "FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)"
[33,] "A data package containing annotation data for JazaeriMetaData"
[34,] "Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)"
[35,] "FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)"
[36,] "PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)"
[37,] "FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)"
[38,] "FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)"
[39,] "Roberts2005Annotation Annotation Data (Roberts2005Annotation)"
[40,] "SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)"
[41,] "A package containing metadata for POCRC arrays"
[42,] "A package containing metadata for Hs6UG171 arrays"
[43,] "A package containing metadata for LAPOINTE arrays"
[44,] NA
[45,] NA
[46,] NA
[47,] NA
[48,] NA
[49,] NA
[50,] NA
[51,] NA
[52,] NA
[53,] NA
[54,] NA
[55,] NA
[56,] NA
[57,] NA
[58,] NA
[59,] NA
[60,] NA
[61,] NA
[62,] NA
[63,] NA
[64,] NA
[65,] "FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)"
[66,] "FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)"
[67,] "FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)"
[68,] NA
[69,] NA
[70,] NA
[71,] NA
[72,] NA
[73,] NA
[74,] NA
[75,] NA
[76,] NA
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[110,] NA
[111,] NA
[112,] NA
[113,] NA
[114,] NA
[115,] NA
[116,] NA
[117,] NA
[118,] "A set of annotation maps describing the entire Gene Ontology"
[119,] "A set of annotation maps for KEGG"
[120,] "Homology information for Homo Sapiens from Inparanoid"
[121,] "Homology information for Mus musculus from Inparanoid"
[122,] "Homology information for Rattus norvegicus from Inparanoid"
[123,] "Homology information for Drosophila melanogaster from Inparanoid"
[124,] "Homology information for Saccharomyces cerevisiae from Inparanoid"
[125,] "Homology information for Arabidopsis thaliana from Inparanoid"
[126,] "Homology information for Danio rerio from Inparanoid"
[127,] "Homology information for Caenorhabditis elegans from Inparanoid"
[128,] "A set of protein ID mappings for PFAM"
AnnObjTarget
[1,] NA
[2,] NA
[3,] NA
[4,] NA
[5,] NA
[6,] NA
[7,] NA
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[96,] NA
[97,] "Human"
[98,] "Malaria"
[99,] "Mouse"
[100,] "Rat"
[101,] "Fly"
[102,] "Yeast"
[103,] "Zebrafish"
[104,] "E coli"
[105,] "E coli"
[106,] "Canine"
[107,] "Bovine"
[108,] "Worm"
[109,] "Pig"
[110,] "Chicken"
[111,] "Streptomyces coelicolor"
[112,] "Yeast"
[113,] "Chimp"
[114,] "Rhesus"
[115,] "Arabidopsis"
[116,] "Anopheles"
[117,] "Xenopus"
[118,] "GO"
[119,] "KEGG"
[120,] "Human"
[121,] "Mouse"
[122,] "Rat"
[123,] "Fly"
[124,] "Yeast"
[125,] "Arabidopsis"
[126,] "Zebrafish"
[127,] "Worm"
[128,] "Human"
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