Files in AnnotationForge

Tools for building SQLite-based annotation data packages

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/makeOrgPackageFromNCBI.R R/sqlForge_schemaGen.R R/sqlForge_wrapBaseDBPkgs.R R/test_AnnotationForge_package.R R/makeOrgPackage.R R/sqlForge_tableBuilder.R R/sqlForge_utils.R R/NCBI_getters.R R/makeProbePackage.R R/sqlForge_makeAnnPkgs.R R/sqlForge_baseMapBuilder.R R/sqlForge_seqnames.R R/makeChipPackageFromDataFrames.R R/makeInparanoidDbs.R R/makeAnnDbPkg.R

vignettes/SQLForge.Rnw

vignettes/MakingNewAnnotationPackages.Rnw

vignettes/MakingNewOrganismPackages.Rmd

vignettes/makeProbePackage.Rnw

vignettes/DBschema-discussion.txt

vignettes/Homo_sapiens.pdf man/AnnDbPkg-maker.Rd man/generateSeqnames_db.Rd man/makeProbePackage.Rd man/makeOrgPackageFromNCBI.Rd man/makeOrgPackage.Rd man/sqlForge-wrapDBPackages.Rd man/sqlForge-makeCHIPDB.Rd man/sqlForge-popDB.Rd man/getProbeData_1lq.Rd man/makeChipPackageFromDataFrames.Rd man/makeInpDb.Rd man/getProbeDataAffy.Rd man/available.db0pkgs.Rd tests/AnnotationForge_unit_tests.R

inst/TODO

inst/NOTES-Herve

inst/doc/MakingNewAnnotationPackages.R

inst/doc/MakingNewOrganismPackages.html

inst/doc/makeProbePackage.pdf

inst/doc/SQLForge.Rnw

inst/doc/MakingNewAnnotationPackages.Rnw

inst/doc/MakingNewOrganismPackages.Rmd inst/doc/SQLForge.pdf

inst/doc/makeProbePackage.Rnw

inst/doc/makeProbePackage.R inst/doc/MakingNewOrganismPackages.R inst/doc/MakingNewAnnotationPackages.pdf inst/doc/SQLForge.R

inst/AnnDbPkg-templates/NCBICHIP.DB/NAMESPACE

inst/AnnDbPkg-templates/NCBICHIP.DB/DESCRIPTION

inst/AnnDbPkg-templates/NCBICHIP.DB/R/zzz.R

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ZFIN.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/WORMBASE.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/PROSITE.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIPROT.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/GO.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/PATH.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHR.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/PFAM.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/OMIM.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/PMID.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/MGI.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASECG.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/BASE.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/FLYBASE.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/UNIGENE.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENSEMBL.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/MAP.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ALIAS2PROBE.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ACCNUM.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/man/ENTREZID.Rd

inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.Rout.save

inst/AnnDbPkg-templates/NCBICHIP.DB/tests/runalltests.R inst/AnnDbPkg-templates/NCBICHIP.DB/tests/unit/test.R

inst/AnnDbPkg-templates/ORGANISM.DB/NAMESPACE

inst/AnnDbPkg-templates/ORGANISM.DB/DESCRIPTION

inst/AnnDbPkg-templates/ORGANISM.DB/R/zzz.R

inst/AnnDbPkg-templates/ORGANISM.DB/man/GO.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/CHR.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/PMID.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/BASE.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/UNIGENE.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/ALIAS2EG.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/ACCNUM.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/man/GO2ALLEGS.Rd

inst/AnnDbPkg-templates/ORGANISM.DB/tests/runalltests.R inst/AnnDbPkg-templates/ORGANISM.DB/tests/unit/test.R

inst/AnnDbPkg-templates/BASEPKG.DB/NAMESPACE

inst/AnnDbPkg-templates/BASEPKG.DB/DESCRIPTION

inst/AnnDbPkg-templates/BASEPKG.DB/man/BASE.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/NAMESPACE

inst/AnnDbPkg-templates/YEASTCHIP.DB/DESCRIPTION

inst/AnnDbPkg-templates/YEASTCHIP.DB/R/zzz.R

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID2PROBE.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO2PROBE.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ORF.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHR.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PMID.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME2PROBE.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/BASE.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/DESCRIPTION.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/PATH2PROBE.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENSEMBL.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/ALIAS.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/man/GO2ALLPROBES.Rd

inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.Rout.save

inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEASTCHIP.DB/tests/unit/test.R

inst/AnnDbPkg-templates/NCBIORG.DB/NAMESPACE

inst/AnnDbPkg-templates/NCBIORG.DB/DESCRIPTION

inst/AnnDbPkg-templates/NCBIORG.DB/R/zzz.R

inst/AnnDbPkg-templates/NCBIORG.DB/man/ZFIN.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/WORMBASE.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/PROSITE.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIPROT.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/GO.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/PATH.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/CHR.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/PFAM.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/UCSCKG.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/OMIM.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLPROT.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/PMID.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/MGI.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASECG.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/BASE.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASE.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/UNIGENE.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBL.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/MAP.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ENSEMBLTRANS.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ALIAS2EG.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/ACCNUM.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/FLYBASEPROT.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/NCBIORG.DB/tests/runalltests.R inst/AnnDbPkg-templates/NCBIORG.DB/tests/unit/test.R

inst/AnnDbPkg-templates/YEAST.DB/NAMESPACE

inst/AnnDbPkg-templates/YEAST.DB/DESCRIPTION

inst/AnnDbPkg-templates/YEAST.DB/R/zzz.R

inst/AnnDbPkg-templates/YEAST.DB/man/SGD.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/UNIPROT.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/GO.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/SMART.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/REJECTORF.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/PATH.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/CHR.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBLPROT.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/PMID.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/BASE.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/DESCRIPTION.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/COMMON2ORF.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBL.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/GO2ALLORFS.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ENSEMBLTRANS.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ALIAS.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/INTERPRO.Rd

inst/AnnDbPkg-templates/YEAST.DB/man/ENTREZID.Rd

inst/AnnDbPkg-templates/YEAST.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEAST.DB/tests/unit/test.R

inst/AnnDbPkg-templates/INPARANOID.DB/NAMESPACE

inst/AnnDbPkg-templates/INPARANOID.DB/DESCRIPTION

inst/AnnDbPkg-templates/INPARANOID.DB/R/zzz.R

inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/INPARANOID.DB/man/ORGVSORGMAP.Rd

inst/AnnDbPkg-templates/INPARANOID.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/INPARANOID.DB/man/BASE.Rd

inst/AnnDbPkg-templates/INPARANOID.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/KEGG.DB/NAMESPACE

inst/AnnDbPkg-templates/KEGG.DB/DESCRIPTION

inst/AnnDbPkg-templates/KEGG.DB/LICENSE

inst/AnnDbPkg-templates/KEGG.DB/R/zzz.R

inst/AnnDbPkg-templates/KEGG.DB/man/EXTID2PATHID.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/GO2ENZYMEID.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/PATHNAME2ID.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/BASE.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2NAME.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/ENZYMEID2GO.Rd

inst/AnnDbPkg-templates/KEGG.DB/man/PATHID2EXTID.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/NAMESPACE

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/DESCRIPTION

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/R/zzz.R

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYCENZYME.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO2ALLTAIRS.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GO.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ARACYC.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHR.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME2TAIR.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PATH2TAIR.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/BASE.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/PMID2TAIR.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/man/ENTREZID.Rd

inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/runalltests.R inst/AnnDbPkg-templates/ARABIDOPSIS.DB/tests/unit/test.R

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/NAMESPACE

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/DESCRIPTION

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/R/zzz.R

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYCENZYME.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID2PROBE.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2PROBE.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ARACYC.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHR.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PMID.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME2PROBE.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/BASE.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/PATH2PROBE.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/ACCNUM.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/man/GO2ALLPROBES.Rd

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.Rout.save

inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/runalltests.R inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/tests/unit/test.R

inst/AnnDbPkg-templates/NOSCHEMA.DB/NAMESPACE

inst/AnnDbPkg-templates/NOSCHEMA.DB/DESCRIPTION

inst/AnnDbPkg-templates/NOSCHEMA.DB/R/zzz.R

inst/AnnDbPkg-templates/NOSCHEMA.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/NOSCHEMA.DB/man/BASE.Rd

inst/AnnDbPkg-templates/NOSCHEMA.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/PFAM.DB/NAMESPACE

inst/AnnDbPkg-templates/PFAM.DB/DESCRIPTION

inst/AnnDbPkg-templates/PFAM.DB/R/zzz.R

inst/AnnDbPkg-templates/PFAM.DB/man/REVERSEBIMAP.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/SCOP2AC.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/PDB.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/FORWARDBIMAP.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/SCOP.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/BASE.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/PDB2AC.Rd

inst/AnnDbPkg-templates/PFAM.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/NAMESPACE

inst/AnnDbPkg-templates/COELICOLOR.DB/DESCRIPTION

inst/AnnDbPkg-templates/COELICOLOR.DB/R/zzz.R

inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/PATH.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHR.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/PROTEINGI.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/PMID.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/BASE.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/ALIAS2EG.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/ACCNUM.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/GO2ALLEGS.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/CHRLOC.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/man/LOCUSTAG.Rd

inst/AnnDbPkg-templates/COELICOLOR.DB/tests/runalltests.R inst/AnnDbPkg-templates/COELICOLOR.DB/tests/unit/test.R

inst/AnnDbPkg-templates/MALARIA.DB/NAMESPACE

inst/AnnDbPkg-templates/MALARIA.DB/DESCRIPTION

inst/AnnDbPkg-templates/MALARIA.DB/R/zzz.R

inst/AnnDbPkg-templates/MALARIA.DB/man/GO.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/PATH.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/BASE.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/GO2ALLORFS.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/MALARIA.DB/man/ALIAS2ORF.Rd

inst/AnnDbPkg-templates/MALARIA.DB/tests/runalltests.R inst/AnnDbPkg-templates/MALARIA.DB/tests/unit/test.R

inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/NAMESPACE

inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/DESCRIPTION

inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/R/zzz.R

inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/BASE.Rd

inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/NAMESPACE

inst/AnnDbPkg-templates/YEASTNCBI.DB/DESCRIPTION

inst/AnnDbPkg-templates/YEASTNCBI.DB/R/zzz.R

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SGD.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/UNIPROT.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/REFSEQ.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORF.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PATH.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHR.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ORGANISM.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/SYMBOL.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/CHRLENGTHS.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/PMID.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/BASE.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ALIAS2EG.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ENZYME.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GENENAME.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/ACCNUM.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/man/GO2ALLEGS.Rd

inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/runalltests.R inst/AnnDbPkg-templates/YEASTNCBI.DB/tests/unit/test.R

inst/AnnDbPkg-templates/GO.DB/NAMESPACE

inst/AnnDbPkg-templates/GO.DB/DESCRIPTION

inst/AnnDbPkg-templates/GO.DB/R/zzz.R

inst/AnnDbPkg-templates/GO.DB/man/BPCHILDREN.Rd

inst/AnnDbPkg-templates/GO.DB/man/OBSOLETE.Rd

inst/AnnDbPkg-templates/GO.DB/man/MFANCESTOR.Rd

inst/AnnDbPkg-templates/GO.DB/man/BPOFFSPRING.Rd

inst/AnnDbPkg-templates/GO.DB/man/SYNONYM.Rd

inst/AnnDbPkg-templates/GO.DB/man/MFPARENTS.Rd

inst/AnnDbPkg-templates/GO.DB/man/TERM.Rd

inst/AnnDbPkg-templates/GO.DB/man/CCOFFSPRING.Rd

inst/AnnDbPkg-templates/GO.DB/man/MAPCOUNTS.Rd

inst/AnnDbPkg-templates/GO.DB/man/MFOFFSPRING.Rd

inst/AnnDbPkg-templates/GO.DB/man/BASE.Rd

inst/AnnDbPkg-templates/GO.DB/man/CCANCESTOR.Rd

inst/AnnDbPkg-templates/GO.DB/man/CCPARENTS.Rd

inst/AnnDbPkg-templates/GO.DB/man/_dbconn.Rd

inst/AnnDbPkg-templates/GO.DB/man/CCCHILDREN.Rd

inst/AnnDbPkg-templates/GO.DB/man/MFCHILDREN.Rd

inst/AnnDbPkg-templates/GO.DB/man/BPANCESTOR.Rd

inst/AnnDbPkg-templates/GO.DB/man/BPPARENTS.Rd

inst/extdata/viableIDs.rda

inst/extdata/unigene.txt

inst/extdata/hcg110_ID

inst/extdata/finch_info.txt

inst/extdata/GO_finch.txt

inst/extdata/inp8_Full_species_mapping

inst/extdata/HG-U95Av2_probe_tab.gz

inst/extdata/inp8_metadata

inst/extdata/hgu95av2_ID

inst/extdata/GentlemanLab/ANNDBPKG-INDEX.TXT

inst/extdata/GentlemanLab/org-batch-script.R inst/extdata/GentlemanLab/chip-batch-script.R inst/extdata/GentlemanLab/generateSchemas.R inst/script/fasterOrgRecipe.R inst/script/viableIDs.R inst/script/makeNoSchemaDb.R inst/script/makeNoSchemaChipDb.R

inst/seqnames-template/NAMESPACE

inst/seqnames-template/DESCRIPTION

inst/seqnames-template/inst/extdata/dataFiles/Homo_sapiens.csv

inst/seqnames-template/inst/extdata/dataFiles/Caenorhabditis_elegans.csv

inst/seqnames-template/inst/extdata/dataFiles/Cyanidioschyzon_merolae.csv

inst/seqnames-template/inst/extdata/dataFiles/Saccharomyces_cerevisiae.csv

inst/seqnames-template/inst/extdata/dataFiles/Arabidopsis_thaliana.csv

inst/seqnames-template/inst/extdata/dataFiles/Oryza_sativa.csv

inst/seqnames-template/inst/extdata/dataFiles/Populus_trichocarpa.csv

inst/seqnames-template/inst/extdata/dataFiles/Zea_mays.csv

inst/seqnames-template/inst/extdata/dataFiles/Drosophila_melanogaster.csv

inst/ProbePkg-template/NAMESPACE

inst/ProbePkg-template/DESCRIPTION

inst/ProbePkg-template/R/zzz.R

inst/ProbePkg-template/man/@PKGNAME@.Rd

inst/unitTests/test_makeOrgPackage.R

AnnotationForge documentation built on Nov. 8, 2020, 8:10 p.m.