Man pages for AnnotationForge
Code for Building Annotation Database Packages

AnnDbPkg-makerCreate an SQLite-based annotation package
available.db0pkgsavailable.db0pkgs
generateSeqnames_dbGenerates the seqnames.db package and database
getProbeData_1lqRead a 1lq file for an Affymetrix genechip
getProbeDataAffyRead a data file describing the probe sequences on an...
makeChipPackageFromDataFramesMaking a chip package from annotations available from...
makeInpDbBuilds an individual DB from online files at inparanoid that...
makeOrgPackageMaking an organism package from annotations available from a...
makeOrgPackageFromNCBIMake an organism package from annotations available from...
makeProbePackageMake a package with probe sequence related data for...
sqlForge-makeCHIPDBCreates a sqlite database, and then makes an annotation...
sqlForge-popDBPopulates an SQLite DB with and produces a schema definition
sqlForge-wrapDBPackagesWrap up all the Base Databases into Packages for distribution
AnnotationForge documentation built on Nov. 17, 2017, 9:12 a.m.