ENCODExplorer: A compilation of ENCODE metadata

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

AuthorCharles Joly Beauparlant [aut, cre], Audrey Lemacon [aut], Arnaud Droit [aut], Louis Gendron [ctb], Astrid-Louise Deschenes [ctb]
Date of publicationNone
MaintainerCharles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
LicenseArtistic-2.0
Version2.0.6

View on Bioconductor

Files

ENCODExplorer/DESCRIPTION
ENCODExplorer/NAMESPACE
ENCODExplorer/NEWS
ENCODExplorer/R
ENCODExplorer/R/ENCODExplorer.R ENCODExplorer/R/createDesign.R ENCODExplorer/R/download.R ENCODExplorer/R/fuzzySearch.R ENCODExplorer/R/prepare_data.R ENCODExplorer/R/query.R ENCODExplorer/R/rest_api.R ENCODExplorer/R/shiny_encode.R
ENCODExplorer/README.md
ENCODExplorer/build
ENCODExplorer/build/vignette.rds
ENCODExplorer/data
ENCODExplorer/data/datalist
ENCODExplorer/data/encode_df.rda
ENCODExplorer/inst
ENCODExplorer/inst/doc
ENCODExplorer/inst/doc/DBmodel.R
ENCODExplorer/inst/doc/DBmodel.Rmd
ENCODExplorer/inst/doc/DBmodel.html
ENCODExplorer/inst/doc/DataUpdate.R
ENCODExplorer/inst/doc/DataUpdate.Rmd
ENCODExplorer/inst/doc/DataUpdate.html
ENCODExplorer/inst/doc/ENCODExplorer.R
ENCODExplorer/inst/doc/ENCODExplorer.Rmd
ENCODExplorer/inst/doc/ENCODExplorer.html
ENCODExplorer/inst/extdata
ENCODExplorer/inst/extdata/ABC_df_lab.rda
ENCODExplorer/inst/extdata/ABC_list_char.rda
ENCODExplorer/inst/extdata/ABC_subset.rda
ENCODExplorer/inst/extdata/BRCA.rda
ENCODExplorer/inst/extdata/a549_ref.rda
ENCODExplorer/inst/extdata/dataFrame_integer.rda
ENCODExplorer/inst/extdata/tables.RDA
ENCODExplorer/inst/extdata/test_encode_ds.rda
ENCODExplorer/inst/extdata/test_encode_exp.rda
ENCODExplorer/inst/extdata/test_mouse_donor_df.rda
ENCODExplorer/inst/extdata/test_rest_query_file.rda
ENCODExplorer/inst/extdata/test_rest_search_dataset.rda
ENCODExplorer/inst/extdata/test_rest_search_experiment.rda
ENCODExplorer/inst/extdata/test_rest_search_file.rda
ENCODExplorer/inst/extdata/test_small_encode_df.rda
ENCODExplorer/inst/extdata/unitTest_df.rda
ENCODExplorer/inst/shiny
ENCODExplorer/inst/shiny/server.R
ENCODExplorer/inst/shiny/ui.R
ENCODExplorer/inst/unitTests
ENCODExplorer/inst/unitTests/Makefile
ENCODExplorer/inst/unitTests/local_test_clean_table.R
ENCODExplorer/inst/unitTests/local_test_extract_table.R
ENCODExplorer/inst/unitTests/local_test_getDatasetDetails.R
ENCODExplorer/inst/unitTests/local_test_getExperimentDetails.R
ENCODExplorer/inst/unitTests/local_test_getFileDetails.R
ENCODExplorer/inst/unitTests/local_test_getFileId.R
ENCODExplorer/inst/unitTests/local_test_query_transform.R
ENCODExplorer/inst/unitTests/test_clean_column.R
ENCODExplorer/inst/unitTests/test_createDesign.R
ENCODExplorer/inst/unitTests/test_download.R
ENCODExplorer/inst/unitTests/test_fuzzySearch.R
ENCODExplorer/inst/unitTests/test_query.R
ENCODExplorer/inst/unitTests/test_search.R
ENCODExplorer/man
ENCODExplorer/man/ENCODExplorer.Rd ENCODExplorer/man/clean_column.Rd ENCODExplorer/man/clean_table.Rd ENCODExplorer/man/createDesign.Rd ENCODExplorer/man/downloadEncode.Rd ENCODExplorer/man/encode_df.Rd ENCODExplorer/man/export_ENCODEdb_matrix.Rd ENCODExplorer/man/extract_table.Rd ENCODExplorer/man/fuzzySearch.Rd ENCODExplorer/man/get_encode_types.Rd ENCODExplorer/man/get_schemas.Rd ENCODExplorer/man/prepare_ENCODEdb.Rd ENCODExplorer/man/queryEncode.Rd ENCODExplorer/man/searchEncode.Rd ENCODExplorer/man/searchToquery.Rd ENCODExplorer/man/shinyEncode.Rd
ENCODExplorer/tests
ENCODExplorer/tests/runTests.R
ENCODExplorer/vignettes
ENCODExplorer/vignettes/DBmodel.Rmd
ENCODExplorer/vignettes/DataUpdate.Rmd
ENCODExplorer/vignettes/ENCODExplorer.Rmd
ENCODExplorer/vignettes/img
ENCODExplorer/vignettes/img/model.png
ENCODExplorer/vignettes/img/query_mcf7.png
ENCODExplorer/vignettes/img/search_a549.png
ENCODExplorer/vignettes/img/shiny1.png
ENCODExplorer/vignettes/img/shiny2.png
ENCODExplorer/vignettes/img/wideDesign.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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