Man pages for ENCODExplorer
A compilation of ENCODE metadata

clean_columnClean a single column of the data.frame
clean_tableClean a data.frame that was produced by extract_table
createDesignCreate a design for the files associated with the result of a...
download_dt_fileDownloads all files inside a data.table.
downloadEncodedownloadEncode is used to download a serie of files or...
download_single_filedownload_single_file Downloads a single file and checks if...
encode_dfMetadata from the ENCODE database in a R object. The tables...
ENCODExplorerENCODExplorer
export_ENCODEdb_matrixExtract essential informations from a list of data.table in a...
extract_tableExtract a data.frame corresponding to a table in ENCODE...
fuzzySearchFuzzysearch is a searching function for a string or a list of...
get_encode_typesA list of known tables from ENCODE database.
get_schemasExtract the schemas from ENCODE's github
prepare_ENCODEdbCreate the list of data.table for the tables in ENCODE
queryEncodeProduce a subset of data following predefined criteria
searchEncodeSimulate a query on ENCODE website and return the result as a...
searchToqueryConvert searchEncode output in queryEncode output.
shinyEncodeLaunch a shiny interface for ENCODExplorer
ENCODExplorer documentation built on Nov. 1, 2018, 5:02 a.m.