API for ENCODExplorer
A compilation of ENCODE metadata

Global functions
ENCODEBindingConsensus-class	Man page
ENCODEExpressionSummary-class	Man page
ENCODESummary-class	Man page
ENCODExplorer	Man page
GenomicOverlaps	Man page Source code
GenomicOverlaps-class	Man page
buildConsensusCommon	Source code
buildConsensusPeaks	Man page Source code
buildExpressionSummary	Man page Source code
choose_interactive_value	Man page Source code
choose_prefered_value	Source code
combined_regions,GenomicOverlaps-method	Man page
combined_regions<-,GenomicOverlaps,GRanges-method	Man page
consensus	Man page
consensus,ENCODEBindingConsensus,ENCODEBindingConsensus-method	Man page
consensus,ENCODEBindingConsensus-method	Man page
consensus_indices	Man page Source code
consensus_regions	Man page Source code
createDesign	Man page
downloadEncode	Man page
download_dt_file	Man page Source code
download_single_file	Man page Source code
dtColumnSummary	Source code
file_metadata	Man page
file_metadata,ENCODESummary,ENCODESummary-method	Man page
file_metadata,ENCODESummary-method	Man page
files	Man page
files,ENCODESummary,ENCODESummary-method	Man page
files,ENCODESummary-method	Man page
filter_on_values	Source code
filter_results_by_file_type	Source code
fuzzySearch	Man page Source code
get_encode_df	Man page Source code
get_encode_df_demo	Man page Source code
get_encode_df_full	Man page Source code
import_column	Source code
initial_regions,GenomicOverlaps-method	Man page
intersect_indices	Man page Source code
intersect_matrix	Man page Source code
intersect_regions	Man page Source code
length,ENCODESummary-method	Man page
length,GenomicOverlaps-method	Man page
metadata,ENCODESummary,ENCODESummary-method	Man page
metadata,ENCODESummary-method	Man page
metric	Man page
metric,ENCODEBindingConsensus,ENCODEBindingConsensus-method	Man page
metric,ENCODEExpressionSummary-method	Man page
metric_data	Man page
metric_data,ENCODEBindingConsensus,ENCODEBindingConsensus-method	Man page
metric_data,ENCODEExpressionSummary-method	Man page
names,ENCODESummary-method	Man page
names,GenomicOverlaps-method	Man page
names<-,ENCODEBindingConsensus,character-method	Man page
names<-,ENCODEExpressionSummary,character-method	Man page
names<-,ENCODESummary,character-method	Man page
names<-,GenomicOverlaps,character-method	Man page
pairwise_overlap	Man page Source code
peaks	Man page
peaks,ENCODEBindingConsensus,ENCODEBindingConsensus-method	Man page
peaks,ENCODEBindingConsensus-method	Man page
preprocess_indices	Source code
queryConsensusPeaks	Man page Source code
queryEncode	Man page Source code
queryEncodeGeneric	Man page Source code
queryExpressionGeneric	Man page Source code
queryGeneExpression	Man page Source code
queryOneField	Source code
queryOneTerm	Source code
queryTranscriptExpression	Man page Source code
query_transform	Source code
raw_data	Man page
raw_data,ENCODEBindingConsensus,ENCODEBindingConsensus-method	Man page
raw_data,ENCODEExpressionSummary-method	Man page
searchEncode	Man page Source code
searchToquery	Man page Source code
select_metric	Source code
shinyEncode	Man page Source code
show,ENCODEBindingConsensus-method	Man page
show,ENCODEExpressionSummary-method	Man page
show,ENCODESummary-method	Man page
split_by_combination	Source code
split_by_metadata	Man page Source code
union_indices	Man page Source code
union_regions	Man page Source code
validate_query_results_for_consensus	Source code
validate_query_results_for_consensus_chip	Source code
validate_query_results_for_consensus_rna	Source code
verify_unique	Source code