jkanche/TreeSE: R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations

scTreeViz provides classes to support interactive data aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different resolutions. The `TreeIndex` class provides methods to manage hierarchy and split the tree at a given resolution or across resolutions. The `TreeViz` class extends `SummarizedExperiment` and can performs quick aggregations on the count matrix defined by clusters.

Getting started

Package details

Bioconductor views GUI Infrastructure SingleCell Visualization
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
jkanche/TreeSE documentation built on May 9, 2021, 7:38 a.m.