jkanche/TreeSE: R/Bioconductor package to manage hierarchies in genomic datasets

This package provides classes to support interactive data aggregation and visualization of genomic datasets with hierarchies. The `TreeIndex` class provides methods to manage hierarchy as tree and split the tree at a given level or at a given node selection thats spans across levels. The `TreeSE` class extends `SummarizedExperiment` and performs aggregations where either rowData or colData or both can be a hierarchy (a `TreeIndex` class).

Getting started

Package details

Bioconductor views GUI Infrastructure Metagenomics SingleCell Visualization
MaintainerHector Corrada Bravo <[email protected]>
LicenseArtistic-2.0
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jkanche/TreeSE")
jkanche/TreeSE documentation built on Nov. 11, 2019, 3:02 p.m.