BiocParallel: Bioconductor facilities for parallel evaluation

This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.

Author
Bioconductor Package Maintainer [cre], Martin Morgan [aut], Valerie Obenchain [aut], Michel Lang [aut], Ryan Thompson [aut]
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
GPL-2 | GPL-3
Version
1.8.1
URLs

View on Bioconductor

Man pages

BatchJobsParam-class
Enable parallelization on batch systems
BiocParallel-package
Bioconductor facilities for parallel evaluation
BiocParallelParam-class
BiocParallelParam objects
bpaggregate
Apply a function on subsets of data frames
bpiterate
Parallel iteration over an indeterminate number of data...
bplapply
Parallel lapply-like functionality
bploop
Internal Functions for SNOW-style Parallel Evaluation
bpmapply
Parallel mapply-like functionality
bpok
Resume computation with partial results
bpschedule
Schedule back-end Params
bptry
Try expression evaluation, recovering from bperror signals
bpvalidate
Tools for developing functions for parallel execution in...
bpvec
Parallel, vectorized evaluation
bpvectorize
Transform vectorized functions into parallelized, vectorized...
DoparParam-class
Enable parallel evaluation using registered dopar backend
MulticoreParam-class
Enable multi-core parallel evaluation
register
Maintain a global registry of available back-end Params
SerialParam-class
Enable serial evaluation
SnowParam-class
Enable simple network of workstations (SNOW)-style parallel...

Files in this package

BiocParallel/DESCRIPTION
BiocParallel/NAMESPACE
BiocParallel/NEWS
BiocParallel/R
BiocParallel/R/AllGenerics.R
BiocParallel/R/BatchJobsParam-class.R
BiocParallel/R/BiocParallelParam-class.R
BiocParallel/R/DoparParam-class.R
BiocParallel/R/ErrorHandling.R
BiocParallel/R/MulticoreParam-class.R
BiocParallel/R/SerialParam-class.R
BiocParallel/R/SnowParam-class.R
BiocParallel/R/SnowParam-utils.R
BiocParallel/R/bpaggregate-methods.R
BiocParallel/R/bpbackend-methods.R
BiocParallel/R/bpisup-methods.R
BiocParallel/R/bpiterate-methods.R
BiocParallel/R/bplapply-methods.R
BiocParallel/R/bploop.R
BiocParallel/R/bpmapply-methods.R
BiocParallel/R/bpschedule-methods.R
BiocParallel/R/bpstart-methods.R
BiocParallel/R/bpstop-methods.R
BiocParallel/R/bpvalidate.R
BiocParallel/R/bpvec-methods.R
BiocParallel/R/bpvectorize-methods.R
BiocParallel/R/bpworkers-methods.R
BiocParallel/R/log.R
BiocParallel/R/progress.R
BiocParallel/R/register.R
BiocParallel/R/utilities.R
BiocParallel/R/zzz.R
BiocParallel/README.md
BiocParallel/build
BiocParallel/build/BiocParallel.pdf
BiocParallel/build/vignette.rds
BiocParallel/inst
BiocParallel/inst/NEWS.Rd
BiocParallel/inst/RMPInode.sh
BiocParallel/inst/RSOCKnode.sh
BiocParallel/inst/doc
BiocParallel/inst/doc/Errors_Logs_And_Debugging.R
BiocParallel/inst/doc/Errors_Logs_And_Debugging.Rnw
BiocParallel/inst/doc/Errors_Logs_And_Debugging.pdf
BiocParallel/inst/doc/Introduction_To_BiocParallel.R
BiocParallel/inst/doc/Introduction_To_BiocParallel.Rnw
BiocParallel/inst/doc/Introduction_To_BiocParallel.pdf
BiocParallel/inst/snow
BiocParallel/inst/snow/RMPInode.R
BiocParallel/inst/snow/RSOCKnode.R
BiocParallel/inst/unitTests
BiocParallel/inst/unitTests/test_BatchJobsParam.R
BiocParallel/inst/unitTests/test_SnowParam.R
BiocParallel/inst/unitTests/test_bpaggregate.R
BiocParallel/inst/unitTests/test_bpiterate.R
BiocParallel/inst/unitTests/test_bplapply.R
BiocParallel/inst/unitTests/test_bploop.R
BiocParallel/inst/unitTests/test_bpmapply.R
BiocParallel/inst/unitTests/test_bpvalidate.R
BiocParallel/inst/unitTests/test_bpvec.R
BiocParallel/inst/unitTests/test_bpvectorize.R
BiocParallel/inst/unitTests/test_errorhandling.R
BiocParallel/inst/unitTests/test_logging.R
BiocParallel/inst/unitTests/test_refclass.R
BiocParallel/inst/unitTests/test_utilities.R
BiocParallel/man
BiocParallel/man/BatchJobsParam-class.Rd
BiocParallel/man/BiocParallel-package.Rd
BiocParallel/man/BiocParallelParam-class.Rd
BiocParallel/man/DoparParam-class.Rd
BiocParallel/man/MulticoreParam-class.Rd
BiocParallel/man/SerialParam-class.Rd
BiocParallel/man/SnowParam-class.Rd
BiocParallel/man/bpaggregate.Rd
BiocParallel/man/bpiterate.Rd
BiocParallel/man/bplapply.Rd
BiocParallel/man/bploop.Rd
BiocParallel/man/bpmapply.Rd
BiocParallel/man/bpok.Rd
BiocParallel/man/bpschedule.Rd
BiocParallel/man/bptry.Rd
BiocParallel/man/bpvalidate.Rd
BiocParallel/man/bpvec.Rd
BiocParallel/man/bpvectorize.Rd
BiocParallel/man/register.Rd
BiocParallel/tests
BiocParallel/tests/test.R
BiocParallel/vignettes
BiocParallel/vignettes/Errors_Logs_And_Debugging.Rnw
BiocParallel/vignettes/Introduction_To_BiocParallel.Rnw