BiocParallel: Bioconductor facilities for parallel evaluation

This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.

AuthorBioconductor Package Maintainer [cre], Martin Morgan [aut], Valerie Obenchain [aut], Michel Lang [aut], Ryan Thompson [aut]
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseGPL-2 | GPL-3
Version1.8.1
https://github.com/Bioconductor/BiocParallel

View on Bioconductor

Functions

BatchJobsParam Man page
BatchJobsParam-class Man page
BiocParallel Man page
BiocParallel-package Man page
BiocParallelParam Man page
BiocParallelParam-class Man page
bpaggregate Man page
bpaggregate,ANY,missing-method Man page
bpaggregate,data.frame,BiocParallelParam-method Man page
bpaggregate,formula,BiocParallelParam-method Man page
bpaggregate,matrix,BiocParallelParam-method Man page
bpbackend Man page
bpbackend<- Man page
bpbackend<-,BatchJobsParam Man page
bpbackend,BatchJobsParam-method Man page
bpbackend,DoparParam-method Man page
bpbackend<-,DoparParam,SOCKcluster-method Man page
bpbackend<-,missing,ANY-method Man page
bpbackend,missing-method Man page
bpbackend<-,SnowParam,cluster-method Man page
bpbackend,SnowParam-method Man page
bpcatchErrors Man page
bpcatchErrors<- Man page
bpcatchErrors<-,BiocParallelParam,logical-method Man page
bpcatchErrors,BiocParallelParam-method Man page
bpisup Man page
bpisup,ANY-method Man page
bpisup,BatchJobsParam-method Man page
bpisup,DoparParam-method Man page
bpisup,missing-method Man page
bpisup,MulticoreParam-method Man page
bpisup,SerialParam-method Man page
bpisup,SnowParam-method Man page
bpiterate Man page
bpiterate,ANY,ANY,BatchJobsParam-method Man page
bpiterate,ANY,ANY,BiocParallelParam-method Man page
bpiterate,ANY,ANY,DoparParam-method Man page
bpiterate,ANY,ANY,missing-method Man page
bpiterate,ANY,ANY,SerialParam-method Man page
bpiterate,ANY,ANY,SnowParam-method Man page
bpjobname Man page
bpjobname<- Man page
bpjobname<-,BiocParallelParam,character-method Man page
bpjobname,BiocParallelParam-method Man page
bplapply Man page
bplapply,ANY,BatchJobsParam-method Man page
bplapply,ANY,BiocParallelParam-method Man page
bplapply,ANY,DoparParam-method Man page
bplapply,ANY,list-method Man page
bplapply,ANY,missing-method Man page
bplapply,ANY,SerialParam-method Man page
bplapply,ANY,SnowParam-method Man page
bplasterror Man page
bplog Man page
bplog<- Man page
bplog,BiocParallelParam-method Man page
bplogdir Man page
bplogdir<- Man page
bplogdir<-,SerialParam,character-method Man page
bplogdir,SerialParam-method Man page
bplogdir<-,SnowParam,character-method Man page
bplogdir,SnowParam-method Man page
bplog<-,SerialParam,logical-method Man page
bplog,SerialParam-method Man page
bplog<-,SnowParam,logical-method Man page
bplog,SnowParam-method Man page
bploop Man page
bploop.iterate Man page
bploop.lapply Man page
bploop.MPInode Man page
bploop.SOCK0node Man page
bploop.SOCKnode Man page
bpmapply Man page
bpmapply,ANY,BiocParallelParam-method Man page
bpmapply,ANY,list-method Man page
bpmapply,ANY,missing-method Man page
bpnworkers Man page
bpok Man page
bpparam Man page
bpprogressbar Man page
bpprogressbar<- Man page
bpprogressbar<-,BiocParallelParam,logical-method Man page
bpprogressbar,BiocParallelParam-method Man page
bpresultdir Man page
bpresultdir<- Man page
bpresultdir<-,SnowParam,character-method Man page
bpresultdir,SnowParam-method Man page
bpresume Man page
bpRNGseed Man page
bpRNGseed<- Man page
bpRNGseed,SnowParam-method Man page
bpRNGseed<-,SnowParam,numeric-method Man page
bprunMPIslave Man page
bpschedule Man page
bpschedule,ANY-method Man page
bpschedule,BatchJobsParam-method Man page
bpschedule,missing-method Man page
bpschedule,MulticoreParam-method Man page
bpstart Man page
bpstart,ANY-method Man page
bpstart,BatchJobsParam-method Man page
bpstart,DoparParam-method Man page
bpstart,missing-method Man page
bpstart,SnowParam-method Man page
bpstop Man page
bpstop,ANY-method Man page
bpstop,BatchJobsParam-method Man page
bpstop,DoparParam-method Man page
bpstop,missing-method Man page
bpstopOnError Man page
bpstopOnError<- Man page
bpstopOnError<-,BiocParallelParam,logical-method Man page
bpstopOnError,BiocParallelParam-method Man page
bpstopOnError<-,DoparParam,logical-method Man page
bpstop,SnowParam-method Man page
bptasks Man page
bptasks<- Man page
bptasks,BiocParallelParam-method Man page
bptasks<-,BiocParallelParam,numeric-method Man page
bpthreshold Man page
bpthreshold<- Man page
bpthreshold,BiocParallelParam-method Man page
bpthreshold<-,SerialParam,character-method Man page
bpthreshold<-,SnowParam,character-method Man page
bpthreshold,SnowParam-method Man page
bptimeout Man page
bptimeout<- Man page
bptimeout,BiocParallelParam-method Man page
bptimeout<-,BiocParallelParam,numeric-method Man page
bptry Man page
bpvalidate Man page
bpvec Man page
bpvec,ANY,BiocParallelParam-method Man page
bpvec,ANY,list-method Man page
bpvec,ANY,missing-method Man page
bpvectorize Man page
bpvectorize,ANY,ANY-method Man page
bpvectorize,ANY,missing-method Man page
bpworkers Man page
bpworkers<- Man page
bpworkers,BatchJobsParam-method Man page
bpworkers,BiocParallelParam-method Man page
bpworkers,DoparParam-method Man page
bpworkers,missing-method Man page
bpworkers<-,MulticoreParam,numeric-method Man page
bpworkers,SerialParam-method Man page
bpworkers<-,SnowParam,character-method Man page
bpworkers,SnowParam-method Man page
bpworkers<-,SnowParam,numeric-method Man page
coerce,SOCKcluster,DoparParam-method Man page
coerce,SOCKcluster,SnowParam-method Man page
coerce,spawnedMPIcluster,SnowParam-method Man page
DoparParam Man page
DoparParam-class Man page
MulticoreParam Man page
MulticoreParam-class Man page
multicoreWorkers Man page
print.remote_error Man page
register Man page
registered Man page
SerialParam Man page
SerialParam-class Man page
show,BatchJobsParam-method Man page
show,BiocParallel-method Man page
show,DoparParam-method Man page
show,MulticoreParam-method Man page
show,SnowParam-method Man page
SnowParam Man page
SnowParam-class Man page
snowWorkers Man page

Files

BiocParallel/DESCRIPTION
BiocParallel/NAMESPACE
BiocParallel/NEWS
BiocParallel/R
BiocParallel/R/AllGenerics.R BiocParallel/R/BatchJobsParam-class.R BiocParallel/R/BiocParallelParam-class.R BiocParallel/R/DoparParam-class.R BiocParallel/R/ErrorHandling.R BiocParallel/R/MulticoreParam-class.R BiocParallel/R/SerialParam-class.R BiocParallel/R/SnowParam-class.R BiocParallel/R/SnowParam-utils.R BiocParallel/R/bpaggregate-methods.R BiocParallel/R/bpbackend-methods.R BiocParallel/R/bpisup-methods.R BiocParallel/R/bpiterate-methods.R BiocParallel/R/bplapply-methods.R BiocParallel/R/bploop.R BiocParallel/R/bpmapply-methods.R BiocParallel/R/bpschedule-methods.R BiocParallel/R/bpstart-methods.R BiocParallel/R/bpstop-methods.R BiocParallel/R/bpvalidate.R BiocParallel/R/bpvec-methods.R BiocParallel/R/bpvectorize-methods.R BiocParallel/R/bpworkers-methods.R BiocParallel/R/log.R BiocParallel/R/progress.R BiocParallel/R/register.R BiocParallel/R/utilities.R BiocParallel/R/zzz.R
BiocParallel/README.md
BiocParallel/build
BiocParallel/build/BiocParallel.pdf
BiocParallel/build/vignette.rds
BiocParallel/inst
BiocParallel/inst/NEWS.Rd
BiocParallel/inst/RMPInode.sh
BiocParallel/inst/RSOCKnode.sh
BiocParallel/inst/doc
BiocParallel/inst/doc/Errors_Logs_And_Debugging.R
BiocParallel/inst/doc/Errors_Logs_And_Debugging.Rnw
BiocParallel/inst/doc/Errors_Logs_And_Debugging.pdf
BiocParallel/inst/doc/Introduction_To_BiocParallel.R
BiocParallel/inst/doc/Introduction_To_BiocParallel.Rnw
BiocParallel/inst/doc/Introduction_To_BiocParallel.pdf
BiocParallel/inst/snow
BiocParallel/inst/snow/RMPInode.R
BiocParallel/inst/snow/RSOCKnode.R
BiocParallel/inst/unitTests
BiocParallel/inst/unitTests/test_BatchJobsParam.R
BiocParallel/inst/unitTests/test_SnowParam.R
BiocParallel/inst/unitTests/test_bpaggregate.R
BiocParallel/inst/unitTests/test_bpiterate.R
BiocParallel/inst/unitTests/test_bplapply.R
BiocParallel/inst/unitTests/test_bploop.R
BiocParallel/inst/unitTests/test_bpmapply.R
BiocParallel/inst/unitTests/test_bpvalidate.R
BiocParallel/inst/unitTests/test_bpvec.R
BiocParallel/inst/unitTests/test_bpvectorize.R
BiocParallel/inst/unitTests/test_errorhandling.R
BiocParallel/inst/unitTests/test_logging.R
BiocParallel/inst/unitTests/test_refclass.R
BiocParallel/inst/unitTests/test_utilities.R
BiocParallel/man
BiocParallel/man/BatchJobsParam-class.Rd BiocParallel/man/BiocParallel-package.Rd BiocParallel/man/BiocParallelParam-class.Rd BiocParallel/man/DoparParam-class.Rd BiocParallel/man/MulticoreParam-class.Rd BiocParallel/man/SerialParam-class.Rd BiocParallel/man/SnowParam-class.Rd BiocParallel/man/bpaggregate.Rd BiocParallel/man/bpiterate.Rd BiocParallel/man/bplapply.Rd BiocParallel/man/bploop.Rd BiocParallel/man/bpmapply.Rd BiocParallel/man/bpok.Rd BiocParallel/man/bpschedule.Rd BiocParallel/man/bptry.Rd BiocParallel/man/bpvalidate.Rd BiocParallel/man/bpvec.Rd BiocParallel/man/bpvectorize.Rd BiocParallel/man/register.Rd
BiocParallel/tests
BiocParallel/tests/test.R
BiocParallel/vignettes
BiocParallel/vignettes/Errors_Logs_And_Debugging.Rnw
BiocParallel/vignettes/Introduction_To_BiocParallel.Rnw

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