MeSHDbi: DBI to construct MeSH-related package from sqlite file
Version 1.12.0

The package is unified implementation of MeSH.db, MeSH.AOR.db, and MeSH.PCR.db and also is interface to construct Gene-MeSH package (MeSH.XXX.eg.db). loadMeSHDbiPkg import sqlite file and generate MeSH.XXX.eg.db.

Browse man pages Browse package API and functions Browse package files

AuthorKoki Tsuyuzaki
Bioconductor views Annotation AnnotationData Infrastructure
Date of publicationNone
MaintainerKoki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
LicenseArtistic-2.0
Version1.12.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MeSHDbi")

Man pages

listDatabases: A function to return the scientific name of package
makeMeSHPackage: Making MeSHDb packages from corresponding table as single...
MeSHDb: MeSHDb objects
meshVersion: A function to return the MeSH version of package
metaPAO1: Metadata to construct user's original MeSHDb package
nomenclature: A function to return the scientific name of package
packageName: A function to return the name of package
PAO1: Data to construct user's original MeSHDb package

Functions

MeSHDb Man page Source code
MeSHDb-class Man page
PAO1 Man page
class:MeSHDb Man page
columns Man page
columns,MeSHDb-method Man page
dbInfo Man page
dbInfo,MeSHDb-method Man page
dbconn Man page
dbconn,MeSHDb-method Man page
dbfile Man page
dbfile,MeSHDb-method Man page
dbschema Man page
dbschema,MeSHDb-method Man page
div Source code
generic,listDatabases Man page
generic,meshVersion Man page
generic,nomenclature Man page
generic,packageName Man page
keys Man page
keys,MeSHDb-method Man page
keytypes Man page
keytypes,MeSHDb-method Man page
listDatabases Man page
listDatabases,MeSHDb-method Man page
loadMeSHDbiPkg Source code
makeGeneMeSHPackage Man page Source code
meshVersion Man page
meshVersion,MeSHDb-method Man page
metaPAO1 Man page
nomenclature Man page
nomenclature,MeSHDb-method Man page
packageName Man page
packageName,MeSHDb-method Man page
select Man page
select,MeSHDb-method Man page
species Man page
species,MeSHDb-method Man page
validateColNames1 Source code
validateColNames2 Source code

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R
R/AllGenerics.R
R/loadMeSHDbiPkg.R
R/makeGeneMeSHPackage.R
R/methods.R
build
build/vignette.rds
data
data/PAO1.rda
data/metaPAO1.rda
inst
inst/CITATION
inst/DBschemas
inst/DBschemas/MeSH.XXX.eg.db.sqlite
inst/DBschemas/org.MeSH.XXX.db.sqlite
inst/GeneMeSHPkg-template
inst/GeneMeSHPkg-template/DESCRIPTION
inst/GeneMeSHPkg-template/NAMESPACE
inst/GeneMeSHPkg-template/R
inst/GeneMeSHPkg-template/R/zzz.R
inst/GeneMeSHPkg-template/man
inst/GeneMeSHPkg-template/man/@PKGNAME@.Rd
inst/NEWS
inst/doc
inst/doc/MeSHDbi.Rnw
inst/doc/MeSHDbi.pdf
inst/unitTests
inst/unitTests/test_select.R
man
man/MeSHDb.Rd
man/PAO1.Rd
man/listDatabases.Rd
man/makeMeSHPackage.Rd
man/meshVersion.Rd
man/metaPAO1.Rd
man/nomenclature.Rd
man/packageName.Rd
tests
tests/runTests.R
vignettes
vignettes/MeSHDbi.Rnw
MeSHDbi documentation built on May 20, 2017, 10:31 p.m.