PAO1: Data to construct user's original MeSHDb package

In MeSHDbi: DBI to construct MeSH-related package from sqlite file

Description

Correspondance between Entrez gene IDs of Pseudomonas aeruiginosa PAO1 and MeSH IDs is provided as demo data. This is to demonstrate how to construct user's original MeSHDb package. The data is based on reciprocal BLASTP best hit (E-value < 200) against Bacillus subtilis subsp. spizizenii str. 168.

Usage

data(PAO1)

Details

• 1st Column: Entrez gene ID

• 2nd Column: MeSH ID

• 3rd Column: MeSH Category

• 4th Column: Source ID. In this case, this is the Entrez gend ID of Bacillus subtilis subsp. spizizenii str. 168

• 5th Column: Source Database. In this case, species name.

Examples

data(PAO1)
head(PAO1)

MeSHDbi documentation built on Nov. 8, 2020, 5:05 p.m.