RGalaxy: Make an R function available in the Galaxy web platform

Given an R function and its manual page, make the documented function available in Galaxy.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("RGalaxy")
AuthorDan Tenenbaum
Bioconductor views Infrastructure
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.18.0

View on Bioconductor

Functions

addTwoNumbers Man page
addTwoNumbersWithTest Man page
anotherTestFunction Man page
foo Man page
functionToGalaxify Man page
galaxy Man page
GalaxyCharacterParam Man page
GalaxyCharacterParam-class Man page
GalaxyClasses Man page
GalaxyConfig Man page
GalaxyConfig-class Man page
GalaxyInputFile Man page
GalaxyInputFile-class Man page
GalaxyIntegerParam Man page
GalaxyIntegerParam-class Man page
GalaxyLogicalParam Man page
GalaxyLogicalParam-class Man page
GalaxyNumericParam Man page
GalaxyNumericParam-class Man page
GalaxyOutput Man page
GalaxyOutput-class Man page
GalaxyParam Man page
GalaxySelectParam Man page
GalaxySelectParam-class Man page
getFriendlyName Man page
gmessage Man page
gstop Man page
gwarning Man page
probeLookup Man page
RserveConnection Man page
RserveConnection-class Man page
runFunctionalTest Man page
testFunctionWithGalaxySelectParam Man page
testFunctionWithSelect Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/galaxy.R R/man.R R/test_functions.R R/utils.R
build
build/vignette.rds
inst
inst/Rserve
inst/Rserve/Rserv.conf
inst/doc
inst/doc/RGalaxy-vignette.R
inst/doc/RGalaxy-vignette.Rmd
inst/doc/RGalaxy-vignette.html
inst/extdata
inst/extdata/a.tsv
inst/extdata/b.tsv
inst/extdata/foo.Rd inst/extdata/functionToGalaxify2.R
inst/extdata/functionToGalaxify2.Rd
inst/functionalTests
inst/functionalTests/addTwoNumbersWithTest
inst/functionalTests/addTwoNumbersWithTest/sum
inst/functionalTests/functionToGalaxify
inst/functionalTests/functionToGalaxify/inputfile1
inst/functionalTests/functionToGalaxify/inputfile2
inst/functionalTests/functionToGalaxify/outputfile1
inst/functionalTests/functionToGalaxify/outputfile2
inst/functionalTests/probeLookup
inst/functionalTests/probeLookup/outputfile
inst/galaxy
inst/galaxy/datatypes_conf.xml
inst/galaxy/tool_conf.xml
inst/samplePkg
inst/samplePkg/DESCRIPTION
inst/samplePkg/NAMESPACE
inst/samplePkg/R
inst/samplePkg/R/functions.R
inst/samplePkg/man
inst/samplePkg/man/testCheckboxes.Rd
inst/samplePkg/man/testMissingParams.Rd
inst/samplePkg/man/testRequiredOption.Rd
inst/template
inst/template/template.R
inst/unitTests
inst/unitTests/test_galaxy.R
man
man/GalaxyClasses.Rd man/GalaxyConfig-class.Rd man/GalaxyInputFile-class.Rd man/GalaxyOutput-class.Rd man/RserveConnection-class.Rd man/addTwoNumbers.Rd man/addTwoNumbersWithTest.Rd man/anotherTestFunction.Rd man/foo.Rd man/functionToGalaxify.Rd man/galaxy.Rd man/getFriendlyName.Rd man/probeLookup.Rd man/runFunctionalTest.Rd man/testFunctionWithGalaxySelectParam.Rd man/testFunctionWithSelect.Rd man/utilities.Rd
tests
tests/runTests.R
vignettes
vignettes/RGalaxy-vignette.Rmd
vignettes/RGalaxy.css
vignettes/addTwoNumbers.jpg
vignettes/addTwoNumbers_result.jpg
vignettes/tools
vignettes/tools/mytool
vignettes/tools/mytool/addTwoNumbers.R
vignettes/tools/mytool/addTwoNumbers.xml
vignettes/tools/mytool/functionToGalaxify.R
vignettes/tools/mytool/functionToGalaxify.xml

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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