genomeIntervals: Operations on genomic intervals

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

AuthorJulien Gagneur <gagneur@genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme
Date of publicationNone
MaintainerJulien Gagneur <gagneur@genzentrum.lmu.de>
LicenseArtistic-2.0
Version1.30.0

View on Bioconductor

Files in this package

genomeIntervals/DESCRIPTION
genomeIntervals/NAMESPACE
genomeIntervals/NEWS
genomeIntervals/R
genomeIntervals/R/AllGenerics.R genomeIntervals/R/Genome_intervals-class.R genomeIntervals/R/Genome_intervals-coercion-methods.R genomeIntervals/R/Genome_intervals-ordering.R genomeIntervals/R/Genome_intervals-package.R genomeIntervals/R/c.R genomeIntervals/R/core_annotated.R genomeIntervals/R/distance_to_nearest-methods.R genomeIntervals/R/interval_complement-methods.R genomeIntervals/R/interval_intersection-methods.R genomeIntervals/R/interval_overlap-methods.R genomeIntervals/R/interval_union-methods.R genomeIntervals/R/parseGffAttributes.R genomeIntervals/R/readGff3.R genomeIntervals/R/show-methods.R genomeIntervals/R/size-methods.R genomeIntervals/R/which_nearest-methods.R genomeIntervals/R/writeGff3.R
genomeIntervals/TODO.txt
genomeIntervals/build
genomeIntervals/build/vignette.rds
genomeIntervals/data
genomeIntervals/data/gen_ints.rda
genomeIntervals/inst
genomeIntervals/inst/doc
genomeIntervals/inst/doc/genomeIntervals.R
genomeIntervals/inst/doc/genomeIntervals.Rnw
genomeIntervals/inst/doc/genomeIntervals.pdf
genomeIntervals/inst/example_files
genomeIntervals/inst/example_files/sgd_simple.gff
genomeIntervals/man
genomeIntervals/man/GenomeIntervals-constructor.Rd genomeIntervals/man/Genome_intervals-class.Rd genomeIntervals/man/Genome_intervals-coercion-methods.Rd genomeIntervals/man/Genome_intervals-deprecated.Rd genomeIntervals/man/Genome_intervals-ordering.Rd genomeIntervals/man/Genome_intervals_stranded-class.Rd genomeIntervals/man/c.Genome_intervals.Rd genomeIntervals/man/core_annotated.Rd genomeIntervals/man/distance_to_nearest-methods.Rd genomeIntervals/man/gen_ints.Rd genomeIntervals/man/genomeIntervals-package.Rd genomeIntervals/man/genomeIntervals-readGff3.Rd genomeIntervals/man/getGffAttribute.Rd genomeIntervals/man/interval_overlap-methods.Rd genomeIntervals/man/interval_set_operations-methods.Rd genomeIntervals/man/parseGffAttributes.Rd
genomeIntervals/script
genomeIntervals/script/makeData.R
genomeIntervals/tests
genomeIntervals/tests/benchmarking-tests.R
genomeIntervals/tests/benchmarking-tests.Rout.save
genomeIntervals/tests/consistency-tests.R
genomeIntervals/tests/fullShow.R
genomeIntervals/vignettes
genomeIntervals/vignettes/genomeIntervals.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.