BiocGenerics: S4 generic functions for Bioconductor

S4 generic functions needed by many Bioconductor packages.

AuthorThe Bioconductor Dev Team
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version0.20.0

View on Bioconductor

Man pages

annotation: Accessing annotation information

append: Append elements to a vector-like object

as.data.frame: Coerce an object into a data frame

as.vector: Coerce an object into a vector

BiocGenerics-package: S4 generic functions for Bioconductor

boxplot: Box plots

cbind: Combine objects by rows or columns

clusterApply: Apply operations using clusters

combine: Combining or merging different Bioconductor data structures

dbconn: Accessing SQLite DB information

density: Kernel density estimation

dge: Accessors and generic functions used in the context of count...

do.call: Execute a function call

duplicated: Determine duplicate elements

eval: Evaluate an (unevaluated) expression

evalq: Evaluate an (unevaluated) expression

Extremes: Maxima and minima

fileName: Accessing the file name of an object

funprog: Common higher-order functions in functional programming...

get: Return the value of a named object

grep: Pattern Matching and Replacement

image: Display a color image

IQR: The Interquartile Range

is.unsorted: Test if a vector-like object is not sorted

lapply: Apply a function over a list-like or vector-like object

lengths: Lengths of the list elements of a list-like object

mad: Median Absolute Deviation

mapply: Apply a function to multiple list-like or vector-like...

match: Value matching

normalize: Normalize an object

nrow: The number of rows/columns of an array-like object

order: Ordering permutation

organism_species: Organism and species accessors

paste: Concatenate strings

plotMA: MA-plot: plot differences versus averages for high-throughput...

plotPCA: PCA-plot: Principal Component Analysis plot

rank: Ranks the values in a vector-like object

relist: Re-listing an unlist()ed object

rep: Replicate elements of a vector-like object

residuals: Extract model residuals

row_colnames: Row and column names

S3-classes-as-S4-classes: S3 classes as S4 classes

score: Score accessor

sets: Set operations

sort: Sorting a vector-like object

start: Start, end, width generic getters and setters

strand: Accessing strand information

subset: Subsetting vector-like, matrix-like and data-frame-like...

table: Cross tabulation and table creation

tapply: Apply a function over a ragged array

testPackage: Run RUnit package unit tests

unique: Extract unique elements

unlist: Flatten list-like objects

unsplit: Unsplit a list-like object

updateObject: Update an object to its current class definition

weights: Extract model weights

which: Subscript generators

xtabs: Cross tabulation

Files in this package

BiocGenerics/DESCRIPTION
BiocGenerics/NAMESPACE
BiocGenerics/R
BiocGenerics/R/Extremes.R BiocGenerics/R/IQR.R BiocGenerics/R/S3-classes-as-S4-classes.R BiocGenerics/R/annotation.R BiocGenerics/R/append.R BiocGenerics/R/as.data.frame.R BiocGenerics/R/as.list.R BiocGenerics/R/as.vector.R BiocGenerics/R/boxplot.R BiocGenerics/R/cbind.R BiocGenerics/R/clusterApply.R BiocGenerics/R/combine.R BiocGenerics/R/dbconn.R BiocGenerics/R/density.R BiocGenerics/R/dge.R BiocGenerics/R/do.call.R BiocGenerics/R/duplicated.R BiocGenerics/R/eval.R BiocGenerics/R/fileName.R BiocGenerics/R/funprog.R BiocGenerics/R/get.R BiocGenerics/R/grep.R BiocGenerics/R/image.R BiocGenerics/R/is.unsorted.R BiocGenerics/R/lapply.R BiocGenerics/R/lengths.R BiocGenerics/R/mad.R BiocGenerics/R/mapply.R BiocGenerics/R/match.R BiocGenerics/R/normalize.R BiocGenerics/R/normarg-utils.R BiocGenerics/R/nrow.R BiocGenerics/R/order.R BiocGenerics/R/organism_species.R BiocGenerics/R/paste.R BiocGenerics/R/plotMA.R BiocGenerics/R/plotPCA.R BiocGenerics/R/rank.R BiocGenerics/R/relist.R BiocGenerics/R/rep.R BiocGenerics/R/replaceSlots.R BiocGenerics/R/residuals.R BiocGenerics/R/row_colnames.R BiocGenerics/R/score.R BiocGenerics/R/sets.R BiocGenerics/R/sort.R BiocGenerics/R/start.R BiocGenerics/R/strand.R BiocGenerics/R/subset.R BiocGenerics/R/table.R BiocGenerics/R/tapply.R BiocGenerics/R/testPackage.R BiocGenerics/R/unique.R BiocGenerics/R/unlist.R BiocGenerics/R/unsplit.R BiocGenerics/R/updateObject.R BiocGenerics/R/weights.R BiocGenerics/R/which.R BiocGenerics/R/xtabs.R BiocGenerics/R/zzz.R
BiocGenerics/TODO
BiocGenerics/inst
BiocGenerics/inst/CITATION
BiocGenerics/inst/unitTests
BiocGenerics/inst/unitTests/test_combine.R
BiocGenerics/inst/unitTests/test_updateObject.R
BiocGenerics/man
BiocGenerics/man/BiocGenerics-package.Rd BiocGenerics/man/Extremes.Rd BiocGenerics/man/IQR.Rd BiocGenerics/man/S3-classes-as-S4-classes.Rd BiocGenerics/man/annotation.Rd BiocGenerics/man/append.Rd BiocGenerics/man/as.data.frame.Rd BiocGenerics/man/as.vector.Rd BiocGenerics/man/boxplot.Rd BiocGenerics/man/cbind.Rd BiocGenerics/man/clusterApply.Rd BiocGenerics/man/combine.Rd BiocGenerics/man/dbconn.Rd BiocGenerics/man/density.Rd BiocGenerics/man/dge.Rd BiocGenerics/man/do.call.Rd BiocGenerics/man/duplicated.Rd BiocGenerics/man/eval.Rd BiocGenerics/man/evalq.Rd BiocGenerics/man/fileName.Rd BiocGenerics/man/funprog.Rd BiocGenerics/man/get.Rd BiocGenerics/man/grep.Rd BiocGenerics/man/image.Rd BiocGenerics/man/is.unsorted.Rd BiocGenerics/man/lapply.Rd BiocGenerics/man/lengths.Rd BiocGenerics/man/mad.Rd BiocGenerics/man/mapply.Rd BiocGenerics/man/match.Rd BiocGenerics/man/normalize.Rd BiocGenerics/man/nrow.Rd BiocGenerics/man/order.Rd BiocGenerics/man/organism_species.Rd BiocGenerics/man/paste.Rd BiocGenerics/man/plotMA.Rd BiocGenerics/man/plotPCA.Rd BiocGenerics/man/rank.Rd BiocGenerics/man/relist.Rd BiocGenerics/man/rep.Rd BiocGenerics/man/residuals.Rd BiocGenerics/man/row_colnames.Rd BiocGenerics/man/score.Rd BiocGenerics/man/sets.Rd BiocGenerics/man/sort.Rd BiocGenerics/man/start.Rd BiocGenerics/man/strand.Rd BiocGenerics/man/subset.Rd BiocGenerics/man/table.Rd BiocGenerics/man/tapply.Rd BiocGenerics/man/testPackage.Rd BiocGenerics/man/unique.Rd BiocGenerics/man/unlist.Rd BiocGenerics/man/unsplit.Rd BiocGenerics/man/updateObject.Rd BiocGenerics/man/weights.Rd BiocGenerics/man/which.Rd BiocGenerics/man/xtabs.Rd
BiocGenerics/tests
BiocGenerics/tests/run_unitTests.R

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