topdownr: Investigation of Fragmentation Conditions in Top-Down Proteomics

The topdownr package allows automatic and systemic investigation of fragment conditions. It creates Thermo Orbitrap Fusion Lumos method files to test hundreds of fragmentation conditions. Additionally it provides functions to analyse and process the generated MS data and determine the best conditions to maximise overall fragment coverage.

Package details

AuthorSebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>), Pavel Shliaha [aut] (<https://orcid.org/0000-0003-3092-0724>), Ole Nørregaard Jensen [aut] (<https://orcid.org/0000-0003-1862-8528>)
Bioconductor views Coverage Infrastructure MassSpectrometry Proteomics
MaintainerSebastian Gibb <[email protected]>
LicenseGPL (>= 3)
Version1.4.0
URL https://github.com/sgibb/topdownr/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("topdownr")

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topdownr documentation built on Nov. 1, 2018, 3:42 a.m.