validMsSettings: List valid MS settings.
In topdownr: Investigation of Fragmentation Conditions in Top-Down Proteomics
Description
Usage
Arguments
Value
Examples
Description
These functions list settings for MS1 or TMS2 that are supported by
Thermo's XmlMethodChanger.
Usage
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validMs1Settings(family = "Calcium", version = "3.2")
validTms2Settings(
type = c("All", "TMS2", "ETD", "CID", "HCD", "UVPD"),
family = "Calcium",
version = "3.2"
)
Arguments
family
character, currently just Calcium is supported
version
character, currently 3.1, 3.2 (default), 3.3 are supported
type
character, type of activation.
Value
matrix with three columns:
name: element name
class: expected R class of the value
type: MS/ActivationType, e.g. MS1/TMS2/ETD/...
Examples
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validMs1Settings()
validTms2Settings()
validTms2Settings("TMS2")
validTms2Settings("ETD")
validTms2Settings(c("TMS2", "ETD"))
topdownr documentation built on Nov. 8, 2020, 8:10 p.m.
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Description Usage Arguments Value Examples
Description
These functions list settings for MS1 or TMS2 that are supported by Thermo's XmlMethodChanger.
Usage
1 2 3 4 5 6 7 | validMs1Settings(family = "Calcium", version = "3.2")
validTms2Settings(
type = c("All", "TMS2", "ETD", "CID", "HCD", "UVPD"),
family = "Calcium",
version = "3.2"
)
|
Arguments
family |
|
version |
|
type |
|
Value
matrix with three columns:
name: element name
class: expected R class of the value
type: MS/ActivationType, e.g. MS1/TMS2/ETD/...
Examples
1 2 3 4 5 | validMs1Settings()
validTms2Settings()
validTms2Settings("TMS2")
validTms2Settings("ETD")
validTms2Settings(c("TMS2", "ETD"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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