splicegear: splicegear

A set of tools to work with alternative splicing

Author
Laurent Gautier <laurent@cbs.dtu.dk>
Date of publication
None
Maintainer
Laurent Gautier <laurent@cbs.dtu.dk>
License
LGPL
Version
1.46.0

View on Bioconductor

Man pages

as.data.frame.SpliceExprSet
SpliceExprSet object to data.frame converter
barplot.SpliceSites
barplot for SpliceSites
buildSpliceSites
Functions to query PALSdb
getRelSignStrength
functions to perform SPLICE
grid.helpers
convenience functions for grid
grid.plot.SpliceSites
Plot splicegear objects
isProbeOnSpliceSite
Check the presence of probes on certain exons
matchprobes2Probes
create Probes object from matchprobes results
plot.SpliceExprSet
plot a SpliceExprSet
plot.SpliceSites
plot a SpliceSites object
plot.SpliceSitesGenomic
Function to plot SpliceSitesGenomic objects
Probes-class
Class "Probes"
sort.SpliceExprSet
A function to sort a SpliceExprSet
SpliceExprSet-class
Class "SpliceExprSet"
spliceset
Example data for splicegear
SpliceSites-class
Class "SpliceSites"
SpliceSitesGenomic-class
Class "SpliceSitesGenomic"
split.SpliceSites
split an instance of SpliceSites

Files in this package

splicegear/DESCRIPTION
splicegear/NAMESPACE
splicegear/R
splicegear/R/algo_Hu_etal.R
splicegear/R/as.data.frame.SpliceSites.R
splicegear/R/as.data.frame.spliceExprSet.R
splicegear/R/barplot.SpliceSites.R
splicegear/R/buildSpliceSites.R
splicegear/R/class-01-SpliceSites.R
splicegear/R/class-02-Probes.R
splicegear/R/class-03-SpliceSitesGenomic.R
splicegear/R/class-04-SpliceExprSet.R
splicegear/R/grid.helpers.R
splicegear/R/grid.plot.Probes.R
splicegear/R/grid.plot.SpliceExprSet.R
splicegear/R/grid.plot.SpliceSites.R
splicegear/R/plot.Probes.R
splicegear/R/plot.SpliceExprSet.R
splicegear/R/plot.SpliceSites.R
splicegear/R/plot.SpliceSitesGenomic.R
splicegear/R/queryPALSdb.R
splicegear/R/split.SpliceSites.R
splicegear/R/zzz.R
splicegear/build
splicegear/build/vignette.rds
splicegear/data
splicegear/data/eset.rda
splicegear/data/probes.rda
splicegear/data/spliceset.rda
splicegear/data/spsites.rda
splicegear/inst
splicegear/inst/doc
splicegear/inst/doc/splicegear.R
splicegear/inst/doc/splicegear.Rnw
splicegear/inst/doc/splicegear.pdf
splicegear/inst/extdata
splicegear/inst/extdata/example.xml
splicegear/man
splicegear/man/Probes-class.Rd
splicegear/man/SpliceExprSet-class.Rd
splicegear/man/SpliceSites-class.Rd
splicegear/man/SpliceSitesGenomic-class.Rd
splicegear/man/as.data.frame.SpliceExprSet.Rd
splicegear/man/barplot.SpliceSites.Rd
splicegear/man/buildSpliceSites.Rd
splicegear/man/getRelSignStrength.Rd
splicegear/man/grid.helpers.Rd
splicegear/man/grid.plot.SpliceSites.Rd
splicegear/man/isProbeOnSpliceSite.Rd
splicegear/man/matchprobes2Probes.Rd
splicegear/man/plot.SpliceExprSet.Rd
splicegear/man/plot.SpliceSites.Rd
splicegear/man/plot.SpliceSitesGenomic.Rd
splicegear/man/sort.SpliceExprSet.Rd
splicegear/man/spliceset.Rd
splicegear/man/split.SpliceSites.Rd
splicegear/vignettes
splicegear/vignettes/splicegear.Rnw