splicegear: splicegear

A set of tools to work with alternative splicing

AuthorLaurent Gautier <laurent@cbs.dtu.dk>
Date of publicationNone
MaintainerLaurent Gautier <laurent@cbs.dtu.dk>
LicenseLGPL
Version1.46.0

View on Bioconductor

Functions

as.data.frame.SpliceExprSet Man page
as.data.frame.SpliceSites Man page
barplot.SpliceSites Man page
buildSpliceSites Man page
eset Man page
exprs<-,SpliceExprSet,ANY-method Man page
exprs,SpliceExprSet-method Man page
getFinalRatio Man page
getPALSdbURL Man page
getRelSignStrength Man page
grid.expand.gp Man page
grid.make.numeric2npc Man page
grid.plot Man page
grid.plot.Probes Man page
grid.plot,Probes,missing-method Man page
grid.plot,Probes,SpliceSites-method Man page
grid.plot.SpliceExprSet Man page
grid.plot.SpliceExprSet Man page
grid.plot,SpliceExprSet,missing-method Man page
grid.plot.SpliceSites Man page
grid.plot,SpliceSites,missing-method Man page
initialize,Probes-method Man page
initialize,SpliceSites-method Man page
isProbeOnSpliceSite Man page
isSpliceSiteOnProbe Man page
matchprobes2Probes Man page
plot.Probes Man page
plot,Probes-method Man page
plot,Probes-method Man page
plot,Probes,missing-method Man page
plot,Probes,SpliceSites-method Man page
plot.SpliceExprSet Man page
plot,SpliceExprSet,missing-method Man page
plot.SpliceSites Man page
plot.SpliceSitesGenomic Man page
plot,SpliceSitesGenomic-method Man page
plot,SpliceSitesGenomic,missing-method Man page
plot,SpliceSites-method Man page
plot,SpliceSites,missing-method Man page
probes Man page
Probes-class Man page
queryPALSdb Man page
show,Probes-method Man page
show,SpliceExprSet-method Man page
show,SpliceSites-method Man page
sort.SpliceExprSet Man page
SpliceExprSet-class Man page
spliceset Man page
spliceSites Man page
SpliceSites-class Man page
SpliceSitesGenomic-class Man page
spliceSites,SpliceExprSet-method Man page
split.SpliceSites Man page
spsites Man page

Files

splicegear/DESCRIPTION
splicegear/NAMESPACE
splicegear/R
splicegear/R/algo_Hu_etal.R splicegear/R/as.data.frame.SpliceSites.R splicegear/R/as.data.frame.spliceExprSet.R splicegear/R/barplot.SpliceSites.R splicegear/R/buildSpliceSites.R splicegear/R/class-01-SpliceSites.R splicegear/R/class-02-Probes.R splicegear/R/class-03-SpliceSitesGenomic.R splicegear/R/class-04-SpliceExprSet.R splicegear/R/grid.helpers.R splicegear/R/grid.plot.Probes.R splicegear/R/grid.plot.SpliceExprSet.R splicegear/R/grid.plot.SpliceSites.R splicegear/R/plot.Probes.R splicegear/R/plot.SpliceExprSet.R splicegear/R/plot.SpliceSites.R splicegear/R/plot.SpliceSitesGenomic.R splicegear/R/queryPALSdb.R splicegear/R/split.SpliceSites.R splicegear/R/zzz.R
splicegear/build
splicegear/build/vignette.rds
splicegear/data
splicegear/data/eset.rda
splicegear/data/probes.rda
splicegear/data/spliceset.rda
splicegear/data/spsites.rda
splicegear/inst
splicegear/inst/doc
splicegear/inst/doc/splicegear.R
splicegear/inst/doc/splicegear.Rnw
splicegear/inst/doc/splicegear.pdf
splicegear/inst/extdata
splicegear/inst/extdata/example.xml
splicegear/man
splicegear/man/Probes-class.Rd splicegear/man/SpliceExprSet-class.Rd splicegear/man/SpliceSites-class.Rd splicegear/man/SpliceSitesGenomic-class.Rd splicegear/man/as.data.frame.SpliceExprSet.Rd splicegear/man/barplot.SpliceSites.Rd splicegear/man/buildSpliceSites.Rd splicegear/man/getRelSignStrength.Rd splicegear/man/grid.helpers.Rd splicegear/man/grid.plot.SpliceSites.Rd splicegear/man/isProbeOnSpliceSite.Rd splicegear/man/matchprobes2Probes.Rd splicegear/man/plot.SpliceExprSet.Rd splicegear/man/plot.SpliceSites.Rd splicegear/man/plot.SpliceSitesGenomic.Rd splicegear/man/sort.SpliceExprSet.Rd splicegear/man/spliceset.Rd splicegear/man/split.SpliceSites.Rd
splicegear/vignettes
splicegear/vignettes/splicegear.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.