isProbeOnSpliceSite: Check the presence of probes on certain exons

In splicegear: splicegear

Description

Return whether the probes are located on exons involved in (putative) alternative splicing or not.

Usage

isProbeOnSpliceSite(probes, spSites)
## isSpliceSiteOnProbe is not yet implemented

Arguments

probes	object of class Probes
spSites	object of class spliceSites

Value

The returned value in a list of two vectors of mode logical of the same length:

isintypeI	whether the probes are in a ‘type I’ region or not.
isintypeII	whether the probe are in a ‘type II’ region or not.

Author(s)

Laurent

References

For details about ‘type I’ and ‘type II’, please refer to Huang Y.-H and Chen Y.-T and Lai J.-J. and Yang S.-T. and Yang U.-C., PALSdb: Putative Alternative Splicing database, Nucleic Acids Research, 2002, pages 186-190

splicegear documentation built on Oct. 31, 2019, 7:40 a.m.