Probes-class: Class "Probes"

In splicegear: splicegear

Description

Information about a set of probes

Objects from the Class

Objects can be created by calls of the form new("Probes", pos) or new("Probes", pos, info). The object are primarily storing the location of the probe on a matching sequence sequence. Optional information can be stored in the slot info (a data.frame).

Slots

pos:

Object of class "matrix". It expects one row per probe. The first column should give the start position while the second column should give the end position

info:

Object of class "data.frame". Optional information one wishes to carry around can be stored here.

Methods

initialize

signature(.Object = "Probes"): ...

show

signature(object): show minimal information

plot

signature(x = "Probes", y = "missing"): plot the position of the probes. (see plot.Probes)

plot

signature(x = "Probes", y = "SpliceSites"): plot the positions of the probes and the positions of the splice sites

See Also

SpliceSites-class, SpliceExprSet-class,

Examples

data(probes)

plot(probes)

splicegear documentation built on Oct. 31, 2019, 7:40 a.m.