AnnotationHub: Client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Author
Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
2.6.4

View on Bioconductor

Man pages

AnnotationHub-class
AnnotationHub objects and their related methods and functions
AnnotationHub-package
Light-weight AnnotationHub 3.0 Client
AnnotationHubResource-class
AnnotationHubResource objects and their related methods and...
getAnnotationHubOption
Get and set options for default AnnotationHub behavior.
listResources
Utility functions for discovering package-specific Hub...

Files in this package

AnnotationHub/DESCRIPTION
AnnotationHub/NAMESPACE
AnnotationHub/NEWS
AnnotationHub/R
AnnotationHub/R/AllGenerics.R
AnnotationHub/R/AnnotationHub-class.R
AnnotationHub/R/AnnotationHubOption.R
AnnotationHub/R/AnnotationHubResource-class.R
AnnotationHub/R/BEDResource-class.R
AnnotationHub/R/EpigenomeResource-class.R
AnnotationHub/R/GenomicScoresResource-class.R
AnnotationHub/R/Hub-class.R
AnnotationHub/R/Hub-utils.R
AnnotationHub/R/ProteomicsResource-class.R
AnnotationHub/R/cache-utils.R
AnnotationHub/R/db-utils.R
AnnotationHub/R/sql-utils.R
AnnotationHub/R/utilities.R
AnnotationHub/R/zzz.R
AnnotationHub/build
AnnotationHub/build/vignette.rds
AnnotationHub/inst
AnnotationHub/inst/doc
AnnotationHub/inst/doc/AnnotationHub-HOWTO.R
AnnotationHub/inst/doc/AnnotationHub-HOWTO.Rmd
AnnotationHub/inst/doc/AnnotationHub-HOWTO.html
AnnotationHub/inst/doc/AnnotationHub.R
AnnotationHub/inst/doc/AnnotationHub.Rmd
AnnotationHub/inst/doc/AnnotationHub.html
AnnotationHub/inst/scripts
AnnotationHub/inst/scripts/shinyTest.R
AnnotationHub/inst/scripts/test.R
AnnotationHub/inst/unitTests
AnnotationHub/inst/unitTests/test_AnnotationHub-class.R
AnnotationHub/inst/unitTests/test_cache.R
AnnotationHub/inst/unitTests/test_tidyGRanges.R
AnnotationHub/inst/unitTests/test_utilities.R
AnnotationHub/man
AnnotationHub/man/AnnotationHub-class.Rd
AnnotationHub/man/AnnotationHub-package.Rd
AnnotationHub/man/AnnotationHubResource-class.Rd
AnnotationHub/man/getAnnotationHubOption.Rd
AnnotationHub/man/listResources.Rd
AnnotationHub/tests
AnnotationHub/tests/runTests.R
AnnotationHub/vignettes
AnnotationHub/vignettes/AnnotationHub-HOWTO.Rmd
AnnotationHub/vignettes/AnnotationHub.Rmd
AnnotationHub/vignettes/display.png