AnnotationHub: Client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHub")
AuthorMartin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]
Bioconductor views DataImport GUI Infrastructure ThirdPartyClient
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version2.6.5

View on Bioconductor

Functions

AnnotationHub Man page
AnnotationHub-class Man page
AnnotationHub-package Man page
AnnotationHubResource-class Man page
as.list.Hub Man page
as.list,Hub-method Man page
cache Man page
cache<- Man page
cache,AnnotationHub-method Man page
cache<-,Hub-method Man page
cache,Hub-method Man page
c,Hub-method Man page
class:AnnotationHub Man page
class:AnnotationHubResource Man page
class:Hub Man page
.db_close Man page
dbconn,Hub-method Man page
dbfile,Hub-method Man page
display Man page
display,Hub-method Man page
fileName,Hub-method Man page
getAnnotationHubOption Man page
getHub Man page
getHub,AnnotationHubResource-method Man page
.Hub Man page
hubCache Man page
hubCache,AnnotationHubResource-method Man page
hubCache,Hub-method Man page
[<-,Hub,character,missing,Hub-method Man page
[,Hub,character,missing-method Man page
[[,Hub,character,missing-method Man page
Hub-class Man page
hubDate Man page
hubDate,Hub-method Man page
[<-,Hub,logical,missing,Hub-method Man page
[,Hub,logical,missing-method Man page
$,Hub-method Man page
[<-,Hub,numeric,missing,Hub-method Man page
[,Hub,numeric,missing-method Man page
[[,Hub,numeric,missing-method Man page
hubUrl Man page
hubUrl,AnnotationHubResource-method Man page
hubUrl,Hub-method Man page
length,Hub-method Man page
listResources Man page
listResources,AnnotationHub-method Man page
loadResources Man page
loadResources,AnnotationHub-method Man page
mcols,Hub-method Man page
names,Hub-method Man page
package Man page
package,Hub-method Man page
possibleDates Man page
query Man page
query,Hub-method Man page
recordStatus Man page
recordStatus,Hub-method Man page
removeCache Man page
setAnnotationHubOption Man page
show,AnnotationHub-method Man page
show,AnnotationHubResource-method Man page
show,Hub-method Man page
snapshotDate Man page
snapshotDate<- Man page
snapshotDate<-,Hub-method Man page
snapshotDate,Hub-method Man page
subset,Hub-method Man page
utilities Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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