oompaBase: Class Unions, Matrix Operations, and Color Schemes for OOMPA
Version 3.2.0

The oompaBase package defines the class unions that must be preloaded in order for the basic tools in the OOMPA (object-oriented microarray and proteomics analysis) project to be defined and loaded. It also includes vectorized operations for row-by-row means, variances, and t-tests. Finally, it provides new color schemes.

Browse man pages Browse package API and functions Browse package files

AuthorKevin R. Coombes
Bioconductor views Infrastructure
Date of publication2017-04-25 15:22:30
MaintainerKevin R. Coombes <krc@silicovore.com>
LicenseApache License (== 2.0)
Version3.2.0
URL http://oompa.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("oompaBase", repos="http://R-Forge.R-project.org")

Man pages

b02-0-ColorCoding-class: Class "ColorCoding"
b02-1-ColorCodedPair-class: Class "ColorCodedPair"
numnull: Class "numeric or NULL"
z01-matrixT: Multiple T Tests by Matrix Multiplication
z02-2-semanticColors: Pre-defined colors for microarray plots
z02-colorSchemes: Color Schemes for Images and Heat Maps

Functions

ColorCodedPair Man page Source code
ColorCodedPair-class Man page
ColorCoding Man page Source code
ColorCoding-class Man page
bluescale Man page Source code
blueyellow Man page Source code
colorCode Man page Source code
grayscale Man page
greenscale Man page Source code
greyscale Man page Source code
jetColors Man page Source code
matrixMean Man page Source code
matrixPairedT Man page Source code
matrixT Man page Source code
matrixUnequalT Man page Source code
matrixVar Man page Source code
numeric or NULL-class Man page
oompaColor Man page
plot,ColorCodedPair,missing-method Man page
redgreen Man page Source code
redscale Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/b00-classunions.R
R/b01-generics.R
R/b02-colorSchemes.R
R/b02-colors.R
R/b03-matrixOps.R
build
build/vignette.rds
inst
inst/doc
inst/doc/oompa.R
inst/doc/oompa.Rnw
inst/doc/oompa.pdf
man
man/b02-0-ColorCoding-class.Rd
man/b02-1-ColorCodedPair-class.Rd
man/numnull.Rd
man/z01-matrixT.Rd
man/z02-2-semanticColors.Rd
man/z02-colorSchemes.Rd
tests
tests/test02-colors.R
tests/test02-colors.Rout.save
tests/testMatrixOps.R
tests/testMatrixOps.Rout.save
vignettes
vignettes/oompa.Rnw
oompaBase documentation built on May 21, 2017, 4:09 a.m.