affxparser: Affymetrix File Parsing SDK
Version 1.48.0

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

AuthorHenrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Bioconductor views DataImport Infrastructure Microarray OneChannel ProprietaryPlatforms
Date of publicationNone
MaintainerKasper Daniel Hansen <kasperdanielhansen@gmail.com>
LicenseLGPL (>= 2)
Version1.48.0
URL https://github.com/HenrikBengtsson/affxparser
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")

Getting started

Package overview

Popular man pages

2._Cell_coordinates_and_cell_indices: 2. Cell coordinates and cell indices
compareCels: Compares the contents of two CEL files
convertCel: Converts a CEL into the same CEL but with another format
createCel: Creates an empty CEL file
readCcgHeader: Reads an the header of an Affymetrix Command Console Generic...
readCelHeader: Parsing the header of an Affymetrix CEL file
writeCdfQcUnits: Writes CDF QC units
See all...

All man pages Function index File listing

Man pages

1._Dictionary: 1. Dictionary
2._Cell_coordinates_and_cell_indices: 2. Cell coordinates and cell indices
9._Advanced_-_Cell-index_maps_for_reading_and_writing: 9. Advanced - Cell-index maps for reading and writing
affxparser-package: Package affxparser
applyCdfGroupFields: Applies a function to a list of fields of each group in a CDF...
applyCdfGroups: Applies a function over the groups in a CDF structure
arrangeCelFilesByChipType: Moves CEL files to subdirectories with names corresponding to...
cdfAddBaseMmCounts: Adds the number of allele A and allele B mismatching...
cdfAddPlasqTypes: Adds the PLASQ types for the probes in a CDF structure
cdfAddProbeOffsets: Adds probe offsets to the groups in a CDF structure
cdfGetFields: Gets a subset of groups fields in a CDF structure
cdfGetGroups: Gets a subset of groups in a CDF structure
cdfGtypeCelToPQ: Function to immitate Affymetrix' gtype\_cel\_to\_pq software
cdfHeaderToCelHeader: Creates a valid CEL header from a CDF header
cdfMergeAlleles: Function to join CDF allele A and allele B groups strand by...
cdfMergeStrands: Function to join CDF groups with the same names
cdfMergeToQuartets: Function to re-arrange CDF groups values in quartets
cdfOrderBy: Orders the fields according to the value of another field in...
cdfOrderColumnsBy: Orders the columns of fields according to the values in a...
cdfSetDimension: Sets the dimension of an object
compareCdfs: Compares the contents of two CDF files
compareCels: Compares the contents of two CEL files
convertCdf: Converts a CDF into the same CDF but with another format
convertCel: Converts a CEL into the same CEL but with another format
copyCel: Copies a CEL file
createCel: Creates an empty CEL file
findCdf: Search for CDF files in multiple directories
findFiles: Finds one or several files in multiple directories
invertMap: Inverts a read or a write map
isCelFile: Checks if a file is a CEL file or not
parseDatHeaderString: Parses a DAT header string
readBpmap: Parses a Bpmap file
readCcg: Reads an Affymetrix Command Console Generic (CCG) Data file
readCcgHeader: Reads an the header of an Affymetrix Command Console Generic...
readCdf: Parsing a CDF file using Affymetrix Fusion SDK
readCdfCellIndices: Reads (one-based) cell indices of units (probesets) in an...
readCdfDataFrame: Reads units (probesets) from an Affymetrix CDF file
readCdfGroupNames: Reads group names for a set of units (probesets) in an...
readCdfHeader: Reads the header associated with an Affymetrix CDF file
readCdfIsPm: Checks if cells in a CDF file are perfect-match probes or not
readCdfNbrOfCellsPerUnitGroup: Gets the number of cells (probes) that each group of each...
readCdfQc: Reads the QC units of CDF file
readCdfUnitNames: Reads unit (probeset) names from an Affymetrix CDF file
readCdfUnits: Reads units (probesets) from an Affymetrix CDF file
readCdfUnitsWriteMap: Generates an Affymetrix cell-index write map from a CDF file
readCel: Reads an Affymetrix CEL file
readCelHeader: Parsing the header of an Affymetrix CEL file
readCelIntensities: Reads the intensities contained in several Affymetrix CEL...
readCelRectangle: Reads a spatial subset of probe-level data from Affymetrix...
readCelUnits: Reads probe-level data ordered as units (probesets) from one...
readChp: A function to read Affymetrix CHP files
readClf: Parsing a CLF file using Affymetrix Fusion SDK
readClfEnv: Parsing a CLF file using Affymetrix Fusion SDK
readClfHeader: Read the header of a CLF file.
readPgf: Parsing a PGF file using Affymetrix Fusion SDK
readPgfEnv: Parsing a PGF file using Affymetrix Fusion SDK
readPgfHeader: Read the header of a PGF file into a list.
updateCel: Updates a CEL file
updateCelUnits: Updates a CEL file unit by unit
writeCdf: Creates a binary CDF file
writeCdfHeader: Writes a CDF header
writeCdfQcUnits: Writes CDF QC units
writeCdfUnits: Writes CDF units
writeCelHeader: Writes a CEL header to a connection
writeTpmap: Writes BPMAP and TPMAP files.

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/901.Dictionary.R
R/902.CellCoordinatesAndIndices.R
R/909.CellIndexMaps.R
R/applyCdfBlocks.R
R/applyCdfGroupFields.R
R/applyCdfGroups.R
R/arrangeCelFilesByChipType.R
R/cdfAddBaseMmCounts.R
R/cdfAddPlasqTypes.R
R/cdfAddProbeOffsets.R
R/cdfGetFields.R
R/cdfGetGroups.R
R/cdfGtypeCelToPQ.R
R/cdfHeaderToCelHeader.R
R/cdfMergeAlleles.R
R/cdfMergeStrands.R
R/cdfMergeToQuartets.R
R/cdfOrderBy.R
R/cdfOrderColumnsBy.R
R/cdfSetDimension.R
R/compareCdfs.R
R/compareCels.R
R/convertCdf.R
R/convertCel.R
R/copyCel.R
R/createCel.R
R/findCdf.R
R/findFiles.R
R/invertMap.R
R/isCelFile.R
R/parseDatHeaderString.R
R/private.assertMap.R
R/private.readCelHeaderV3.R
R/private.readCelHeaderV4.R
R/private.unwrapCelHeaderV4.R
R/private.wrapCelHeaderV4.R
R/readBpmap.R
R/readBpmapHeader.R
R/readBpmapSeqInfo.R
R/readCcg.R
R/readCcgHeader.R
R/readCdf.R
R/readCdfCellIndices.R
R/readCdfDataFrame.R
R/readCdfGroupNames.R
R/readCdfHeader.R
R/readCdfIsPm.R
R/readCdfNbrOfCellsPerUnitGroup.R
R/readCdfQc.R
R/readCdfUnitNames.R
R/readCdfUnits.R
R/readCdfUnitsWriteMap.R
R/readCel.R
R/readCelHeader.R
R/readCelIntensities.R
R/readCelRectangle.R
R/readCelUnits.R
R/readChp.R
R/readClf.R
R/readPgf.R
R/testWriteAndReadEmptyCdf.R
R/testWriteAndReadEmptyCel.R
R/tpmap2bpmap.R
R/traverseCcg.R
R/updateCel.R
R/updateCelUnits.R
R/writeCcg.R
R/writeCdf.R
R/writeCdf.private.R
R/writeCdfHeader.R
R/writeCdfQcUnits.R
R/writeCdfUnits.R
R/writeCelHeader.R
R/writeTpmap.R
R/zzz.R
cleanup
inst
inst/extras
inst/extras/easternEgg.gz
inst/info
inst/info/Makefile
inst/info/changes2fusion.txt
inst/info/fusion_1.1.0_patches
inst/info/fusion_1.1.0_patches/AffxByteArray.cpp-patch
inst/info/fusion_1.1.0_patches/AffxConv.cpp-patch
inst/info/fusion_1.1.0_patches/AffymetrixBaseTypes.h-patch
inst/info/fusion_1.1.0_patches/CDFFileData.cpp-patch
inst/info/fusion_1.1.0_patches/affy-base-types.h-patch
inst/info/fusion_1.1.0_patches/gcc-4.7.cpp-patch
inst/info/fusion_1.1.2_patches
inst/info/fusion_1.1.2_patches/AffxByteArray.cpp-patch
inst/info/fusion_1.1.2_patches/AffxConv.cpp-patch
inst/info/fusion_1.1.2_patches/AffxConv.cpp-patch2
inst/info/fusion_1.1.2_patches/AffymetrixBaseTypes.h-patch
inst/info/fusion_1.1.2_patches/CDFFileData.cpp-patch
inst/info/fusion_1.1.2_patches/CELFileData.h-patch
inst/info/fusion_1.1.2_patches/CHPMultiDataData.cpp-patch
inst/info/fusion_1.1.2_patches/FileUtils.cpp-patch
inst/info/fusion_1.1.2_patches/Fs.cpp-patch
inst/info/fusion_1.1.2_patches/TsvFile.cpp-patch
inst/info/fusion_1.1.2_patches/Util.cpp-patch
inst/info/fusion_1.1.2_patches/Verbose.cpp-patch
inst/info/fusion_1.1.2_patches/affy-base-types.h-patch
inst/info/fusion_sdk_license.html
inst/testscripts
inst/testscripts/manualTest.R
inst/testscripts/speedtest.R
inst/testscripts/writeAndReadEmptyCdf.R
inst/testscripts/writeAndReadEmptyCel.R
man
man/1._Dictionary.Rd
man/2._Cell_coordinates_and_cell_indices.Rd
man/9._Advanced_-_Cell-index_maps_for_reading_and_writing.Rd
man/affxparser-package.Rd
man/applyCdfGroupFields.Rd
man/applyCdfGroups.Rd
man/arrangeCelFilesByChipType.Rd
man/cdfAddBaseMmCounts.Rd
man/cdfAddPlasqTypes.Rd
man/cdfAddProbeOffsets.Rd
man/cdfGetFields.Rd
man/cdfGetGroups.Rd
man/cdfGtypeCelToPQ.Rd
man/cdfHeaderToCelHeader.Rd
man/cdfMergeAlleles.Rd
man/cdfMergeStrands.Rd
man/cdfMergeToQuartets.Rd
man/cdfOrderBy.Rd
man/cdfOrderColumnsBy.Rd
man/cdfSetDimension.Rd
man/compareCdfs.Rd
man/compareCels.Rd
man/convertCdf.Rd
man/convertCel.Rd
man/copyCel.Rd
man/createCel.Rd
man/findCdf.Rd
man/findFiles.Rd
man/invertMap.Rd
man/isCelFile.Rd
man/parseDatHeaderString.Rd
man/readBpmap.Rd
man/readCcg.Rd
man/readCcgHeader.Rd
man/readCdf.Rd
man/readCdfCellIndices.Rd
man/readCdfDataFrame.Rd
man/readCdfGroupNames.Rd
man/readCdfHeader.Rd
man/readCdfIsPm.Rd
man/readCdfNbrOfCellsPerUnitGroup.Rd
man/readCdfQc.Rd
man/readCdfUnitNames.Rd
man/readCdfUnits.Rd
man/readCdfUnitsWriteMap.Rd
man/readCel.Rd
man/readCelHeader.Rd
man/readCelIntensities.Rd
man/readCelRectangle.Rd
man/readCelUnits.Rd
man/readChp.Rd
man/readClf.Rd
man/readClfEnv.Rd
man/readClfHeader.Rd
man/readPgf.Rd
man/readPgfEnv.Rd
man/readPgfHeader.Rd
man/updateCel.Rd
man/updateCelUnits.Rd
man/writeCdf.Rd
man/writeCdfHeader.Rd
man/writeCdfQcUnits.Rd
man/writeCdfUnits.Rd
man/writeCelHeader.Rd
man/writeTpmap.Rd
src
src/Makevars
src/Makevars.win
src/RAffxErrHandler.h
src/R_affx_bpmap_parser.cpp
src/R_affx_cdf_extras.cpp
src/R_affx_cdf_extras.h
src/R_affx_cdf_parser.cpp
src/R_affx_cel_parser.cpp
src/R_affx_chp_parser.cpp
src/R_affx_clf_pgf_parser.cpp
src/R_affx_constants.h
src/R_affx_test_bpmap_cmdline.cpp
src/R_affx_test_cdfwriter_cmdline.cpp
src/R_affx_test_celwriter_cmdline.cpp
src/R_affx_test_cmd_line.cpp
src/_mingw.h
src/_mingw_gcc463.h
src/_mingw_gcc493.h
src/fusion_sdk
src/fusion_sdk/calvin_files
src/fusion_sdk/calvin_files/array
src/fusion_sdk/calvin_files/array/src
src/fusion_sdk/calvin_files/array/src/ArrayAttributes.cpp
src/fusion_sdk/calvin_files/array/src/ArrayAttributes.h
src/fusion_sdk/calvin_files/array/src/ArrayAudit.cpp
src/fusion_sdk/calvin_files/array/src/ArrayAudit.h
src/fusion_sdk/calvin_files/array/src/ArrayAuditActionTypes.h
src/fusion_sdk/calvin_files/array/src/ArrayData.cpp
src/fusion_sdk/calvin_files/array/src/ArrayData.h
src/fusion_sdk/calvin_files/array/src/ArrayId.h
src/fusion_sdk/calvin_files/array/src/ArrayMedia.cpp
src/fusion_sdk/calvin_files/array/src/ArrayMedia.h
src/fusion_sdk/calvin_files/array/src/CreateStep.cpp
src/fusion_sdk/calvin_files/array/src/CreateStep.h
src/fusion_sdk/calvin_files/array/src/PATAssignment.cpp
src/fusion_sdk/calvin_files/array/src/PATAssignment.h
src/fusion_sdk/calvin_files/data
src/fusion_sdk/calvin_files/data/src
src/fusion_sdk/calvin_files/data/src/AllelePeaks.h
src/fusion_sdk/calvin_files/data/src/CDFData.cpp
src/fusion_sdk/calvin_files/data/src/CDFData.h
src/fusion_sdk/calvin_files/data/src/CDFDataTypes.h
src/fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h
src/fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFProbeInformation.h
src/fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h
src/fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h
src/fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp
src/fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h
src/fusion_sdk/calvin_files/data/src/CELData.cpp
src/fusion_sdk/calvin_files/data/src/CELData.h
src/fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp
src/fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h
src/fusion_sdk/calvin_files/data/src/CHPData.cpp
src/fusion_sdk/calvin_files/data/src/CHPData.h
src/fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp
src/fusion_sdk/calvin_files/data/src/CHPExpressionEntry.h
src/fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp
src/fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h
src/fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp
src/fusion_sdk/calvin_files/data/src/CHPMultiDataData.h
src/fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp
src/fusion_sdk/calvin_files/data/src/CHPQuantificationData.h
src/fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp
src/fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h
src/fusion_sdk/calvin_files/data/src/CHPReseqEntry.h
src/fusion_sdk/calvin_files/data/src/CHPTilingData.cpp
src/fusion_sdk/calvin_files/data/src/CHPTilingData.h
src/fusion_sdk/calvin_files/data/src/CHPTilingEntry.h
src/fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp
src/fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h
src/fusion_sdk/calvin_files/data/src/ChromosomeMultiDataSummaryData.h
src/fusion_sdk/calvin_files/data/src/ChromosomeSegmentMultiDataData.h
src/fusion_sdk/calvin_files/data/src/ColumnInfo.cpp
src/fusion_sdk/calvin_files/data/src/ColumnInfo.h
src/fusion_sdk/calvin_files/data/src/CytoGenotypeCallMultiDataData.h
src/fusion_sdk/calvin_files/data/src/DATData.cpp
src/fusion_sdk/calvin_files/data/src/DATData.h
src/fusion_sdk/calvin_files/data/src/DataException.cpp
src/fusion_sdk/calvin_files/data/src/DataException.h
src/fusion_sdk/calvin_files/data/src/DataGroup.cpp
src/fusion_sdk/calvin_files/data/src/DataGroup.h
src/fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp
src/fusion_sdk/calvin_files/data/src/DataGroupHeader.h
src/fusion_sdk/calvin_files/data/src/DataSet.cpp
src/fusion_sdk/calvin_files/data/src/DataSet.h
src/fusion_sdk/calvin_files/data/src/DataSetHeader.cpp
src/fusion_sdk/calvin_files/data/src/DataSetHeader.h
src/fusion_sdk/calvin_files/data/src/FamilialMultiDataData.h
src/fusion_sdk/calvin_files/data/src/FileHeader.cpp
src/fusion_sdk/calvin_files/data/src/FileHeader.h
src/fusion_sdk/calvin_files/data/src/GenericData.cpp
src/fusion_sdk/calvin_files/data/src/GenericData.h
src/fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp
src/fusion_sdk/calvin_files/data/src/GenericDataHeader.h
src/fusion_sdk/calvin_files/data/src/GenericDataTypes.h
src/fusion_sdk/calvin_files/data/src/MarkerABSignals.h
src/fusion_sdk/calvin_files/data/src/MemMapFile.cpp
src/fusion_sdk/calvin_files/data/src/MemMapFile.h
src/fusion_sdk/calvin_files/data/src/ProbeSetMultiDataData.cpp
src/fusion_sdk/calvin_files/data/src/ProbeSetMultiDataData.h
src/fusion_sdk/calvin_files/data/src/ProbeSetQuantificationData.h
src/fusion_sdk/calvin_files/data/src/ProbeSetQuantificationDetectionData.h
src/fusion_sdk/calvin_files/data/src/TilingResultData.h
src/fusion_sdk/calvin_files/exception
src/fusion_sdk/calvin_files/exception/src
src/fusion_sdk/calvin_files/exception/src/DevelopmentException.cpp
src/fusion_sdk/calvin_files/exception/src/DevelopmentException.h
src/fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp
src/fusion_sdk/calvin_files/exception/src/ExceptionBase.h
src/fusion_sdk/calvin_files/exception/src/InterpretationException.cpp
src/fusion_sdk/calvin_files/exception/src/InterpretationException.h
src/fusion_sdk/calvin_files/fusion
src/fusion_sdk/calvin_files/fusion/src
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/FusionArrayFileReader.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionArrayFileReader.h
src/fusion_sdk/calvin_files/fusion/src/FusionBARData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionBARData.h
src/fusion_sdk/calvin_files/fusion/src/FusionBEDData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionBEDData.h
src/fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCDFData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h
src/fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCELData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.h
src/fusion_sdk/calvin_files/fusion/src/FusionCoords.h
src/fusion_sdk/calvin_files/fusion/src/FusionGRDData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionGRDData.h
src/fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.h
src/fusion_sdk/calvin_files/fusion/src/FusionMSKData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionMSKData.h
src/fusion_sdk/calvin_files/fusion/src/FusionPSIData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionPSIData.h
src/fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h
src/fusion_sdk/calvin_files/fusion/src/FusionSMDData.cpp
src/fusion_sdk/calvin_files/fusion/src/FusionSMDData.h
src/fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp
src/fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h
src/fusion_sdk/calvin_files/fusion/src/fusionexception.h
src/fusion_sdk/calvin_files/parameter
src/fusion_sdk/calvin_files/parameter/src
src/fusion_sdk/calvin_files/parameter/src/AffymetrixParameterConsts.h
src/fusion_sdk/calvin_files/parameter/src/CELAlgorithmParameterNames.h
src/fusion_sdk/calvin_files/parameter/src/Parameter.h
src/fusion_sdk/calvin_files/parameter/src/ParameterException.cpp
src/fusion_sdk/calvin_files/parameter/src/ParameterException.h
src/fusion_sdk/calvin_files/parameter/src/ParameterFileData.cpp
src/fusion_sdk/calvin_files/parameter/src/ParameterFileData.h
src/fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp
src/fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h
src/fusion_sdk/calvin_files/parsers
src/fusion_sdk/calvin_files/parsers/src
src/fusion_sdk/calvin_files/parsers/src/ArrayFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/ArrayFileReader.h
src/fusion_sdk/calvin_files/parsers/src/AuditFileConstants.h
src/fusion_sdk/calvin_files/parsers/src/AuditFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/AuditFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CDFFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h
src/fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/CelFileReader.h
src/fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DATFileReader.h
src/fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataGroupReader.h
src/fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp
src/fusion_sdk/calvin_files/parsers/src/DataSetReader.h
src/fusion_sdk/calvin_files/parsers/src/FileException.cpp
src/fusion_sdk/calvin_files/parsers/src/FileException.h
src/fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/FileInput.cpp
src/fusion_sdk/calvin_files/parsers/src/FileInput.h
src/fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp
src/fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h
src/fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/GenericFileReader.h
src/fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/GridControlFileReader.h
src/fusion_sdk/calvin_files/parsers/src/ParameterFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/ParameterFileReader.h
src/fusion_sdk/calvin_files/parsers/src/SAXArrayHandlers.cpp
src/fusion_sdk/calvin_files/parsers/src/SAXArrayHandlers.h
src/fusion_sdk/calvin_files/parsers/src/SAXParameterFileHandlers.cpp
src/fusion_sdk/calvin_files/parsers/src/SAXParameterFileHandlers.h
src/fusion_sdk/calvin_files/parsers/src/SAXTemplateHandlers.cpp
src/fusion_sdk/calvin_files/parsers/src/SAXTemplateHandlers.h
src/fusion_sdk/calvin_files/parsers/src/TemplateFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/TemplateFileReader.h
src/fusion_sdk/calvin_files/parsers/src/TextFileReader.cpp
src/fusion_sdk/calvin_files/parsers/src/TextFileReader.h
src/fusion_sdk/calvin_files/portability
src/fusion_sdk/calvin_files/portability/src
src/fusion_sdk/calvin_files/portability/src/AffymetrixBaseTypes.h
src/fusion_sdk/calvin_files/template
src/fusion_sdk/calvin_files/template/src
src/fusion_sdk/calvin_files/template/src/TemplateData.cpp
src/fusion_sdk/calvin_files/template/src/TemplateData.h
src/fusion_sdk/calvin_files/template/src/TemplateId.h
src/fusion_sdk/calvin_files/utils
src/fusion_sdk/calvin_files/utils/src
src/fusion_sdk/calvin_files/utils/src/AffyStlCollectionTypes.h
src/fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp
src/fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h
src/fusion_sdk/calvin_files/utils/src/Calvin.cpp
src/fusion_sdk/calvin_files/utils/src/Calvin.h
src/fusion_sdk/calvin_files/utils/src/Coords.h
src/fusion_sdk/calvin_files/utils/src/DateTime.cpp
src/fusion_sdk/calvin_files/utils/src/DateTime.h
src/fusion_sdk/calvin_files/utils/src/FileUtils.cpp
src/fusion_sdk/calvin_files/utils/src/FileUtils.h
src/fusion_sdk/calvin_files/utils/src/GenoCallCoder.cpp
src/fusion_sdk/calvin_files/utils/src/GenoCallCoder.h
src/fusion_sdk/calvin_files/utils/src/StringUtils.cpp
src/fusion_sdk/calvin_files/utils/src/StringUtils.h
src/fusion_sdk/calvin_files/utils/src/Subgrids.h
src/fusion_sdk/calvin_files/utils/src/checksum.cpp
src/fusion_sdk/calvin_files/utils/src/checksum.h
src/fusion_sdk/calvin_files/writers
src/fusion_sdk/calvin_files/writers/src
src/fusion_sdk/calvin_files/writers/src/ArrayFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/ArrayFileWriter.h
src/fusion_sdk/calvin_files/writers/src/AuditFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/AuditFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFCntrlFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFCntrlFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFCntrlProbeSetWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFCntrlProbeSetWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CDFProbeSetWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CDFProbeSetWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPMultiDataFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationDetectionFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileBufferWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileBufferWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPQuantificationFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCHPTilingFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCHPTilingFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CalvinCelFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CalvinCelFileWriter.h
src/fusion_sdk/calvin_files/writers/src/CombinedDatConstants.h
src/fusion_sdk/calvin_files/writers/src/CopyNumberResultWriter.cpp
src/fusion_sdk/calvin_files/writers/src/CopyNumberResultWriter.h
src/fusion_sdk/calvin_files/writers/src/DATFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DATFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/DATFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DATFileWriter.h
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataGroupHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/DataGroupWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataGroupWriter.h
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderAppend.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderAppend.h
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/DataSetUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetUpdater.h
src/fusion_sdk/calvin_files/writers/src/DataSetWriter.cpp
src/fusion_sdk/calvin_files/writers/src/DataSetWriter.h
src/fusion_sdk/calvin_files/writers/src/FileHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/FileHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/FileHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/FileHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/FileOutput.cpp
src/fusion_sdk/calvin_files/writers/src/FileOutput.h
src/fusion_sdk/calvin_files/writers/src/FileWriteException.cpp
src/fusion_sdk/calvin_files/writers/src/FileWriteException.h
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderUpdater.h
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderWriter.cpp
src/fusion_sdk/calvin_files/writers/src/GenericDataHeaderWriter.h
src/fusion_sdk/calvin_files/writers/src/GenericFileUpdater.cpp
src/fusion_sdk/calvin_files/writers/src/GenericFileUpdater.h
src/fusion_sdk/calvin_files/writers/src/GenericFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/GenericFileWriter.h
src/fusion_sdk/calvin_files/writers/src/GridControlFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/GridControlFileWriter.h
src/fusion_sdk/calvin_files/writers/src/MMDATFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/MMDATFileWriter.h
src/fusion_sdk/calvin_files/writers/src/MMDataSetDataWriter.cpp
src/fusion_sdk/calvin_files/writers/src/MMDataSetDataWriter.h
src/fusion_sdk/calvin_files/writers/src/MultiChannelCelFileCollater.cpp
src/fusion_sdk/calvin_files/writers/src/MultiChannelCelFileCollater.h
src/fusion_sdk/calvin_files/writers/src/TemplateFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/TemplateFileWriter.h
src/fusion_sdk/calvin_files/writers/src/TextFileWriter.cpp
src/fusion_sdk/calvin_files/writers/src/TextFileWriter.h
src/fusion_sdk/file
src/fusion_sdk/file/1LQFileData.cpp
src/fusion_sdk/file/1LQFileData.h
src/fusion_sdk/file/BARFileData.cpp
src/fusion_sdk/file/BARFileData.h
src/fusion_sdk/file/BARFileWriter.cpp
src/fusion_sdk/file/BARFileWriter.h
src/fusion_sdk/file/BEDFileData.cpp
src/fusion_sdk/file/BEDFileData.h
src/fusion_sdk/file/BEDFileWriter.cpp
src/fusion_sdk/file/BEDFileWriter.h
src/fusion_sdk/file/BPMAPFileData.cpp
src/fusion_sdk/file/BPMAPFileData.h
src/fusion_sdk/file/BPMAPFileWriter.cpp
src/fusion_sdk/file/BPMAPFileWriter.h
src/fusion_sdk/file/CDFFileData.cpp
src/fusion_sdk/file/CDFFileData.h
src/fusion_sdk/file/CELFileData.cpp
src/fusion_sdk/file/CELFileData.h
src/fusion_sdk/file/CELFileWriter.cpp
src/fusion_sdk/file/CELFileWriter.h
src/fusion_sdk/file/CHPFileBufferWriter.cpp
src/fusion_sdk/file/CHPFileBufferWriter.h
src/fusion_sdk/file/CHPFileData.cpp
src/fusion_sdk/file/CHPFileData.h
src/fusion_sdk/file/CHPFileUpdater.cpp
src/fusion_sdk/file/CHPFileUpdater.h
src/fusion_sdk/file/CHPFileWriter.cpp
src/fusion_sdk/file/CHPFileWriter.h
src/fusion_sdk/file/CMSFileData.cpp
src/fusion_sdk/file/CMSFileData.h
src/fusion_sdk/file/DATFileData.cpp
src/fusion_sdk/file/DATFileData.h
src/fusion_sdk/file/DttArrayFileReader.cpp
src/fusion_sdk/file/DttArrayFileReader.h
src/fusion_sdk/file/EXPFileData.cpp
src/fusion_sdk/file/EXPFileData.h
src/fusion_sdk/file/FileIO.cpp
src/fusion_sdk/file/FileIO.h
src/fusion_sdk/file/FileWriter.cpp
src/fusion_sdk/file/FileWriter.h
src/fusion_sdk/file/GQCFileData.cpp
src/fusion_sdk/file/GQCFileData.h
src/fusion_sdk/file/GRCFileData.cpp
src/fusion_sdk/file/GRCFileData.h
src/fusion_sdk/file/GRCFileWriter.cpp
src/fusion_sdk/file/GRCFileWriter.h
src/fusion_sdk/file/GRDFileData.cpp
src/fusion_sdk/file/GRDFileData.h
src/fusion_sdk/file/GRDFileWriter.cpp
src/fusion_sdk/file/GRDFileWriter.h
src/fusion_sdk/file/GridControlData.h
src/fusion_sdk/file/GridCoordinates.h
src/fusion_sdk/file/IniFile.cpp
src/fusion_sdk/file/IniFile.h
src/fusion_sdk/file/IntervalEntry.h
src/fusion_sdk/file/MDLFileData.cpp
src/fusion_sdk/file/MDLFileData.h
src/fusion_sdk/file/MSKFileData.cpp
src/fusion_sdk/file/MSKFileData.h
src/fusion_sdk/file/MSKFileWriter.cpp
src/fusion_sdk/file/MSKFileWriter.h
src/fusion_sdk/file/PSIFileData.cpp
src/fusion_sdk/file/PSIFileData.h
src/fusion_sdk/file/SAXDttArrayHandlers.cpp
src/fusion_sdk/file/SAXDttArrayHandlers.h
src/fusion_sdk/file/SMDFileData.cpp
src/fusion_sdk/file/SMDFileData.h
src/fusion_sdk/file/SimpleBinaryFile.cpp
src/fusion_sdk/file/SimpleBinaryFile.h
src/fusion_sdk/file/TagValuePair.h
src/fusion_sdk/file/TsvFile
src/fusion_sdk/file/TsvFile/BgpFile.cpp
src/fusion_sdk/file/TsvFile/BgpFile.h
src/fusion_sdk/file/TsvFile/ClfFile.cpp
src/fusion_sdk/file/TsvFile/ClfFile.h
src/fusion_sdk/file/TsvFile/DumpPgf.cpp
src/fusion_sdk/file/TsvFile/DumpPgf.h
src/fusion_sdk/file/TsvFile/PgfFile.cpp
src/fusion_sdk/file/TsvFile/PgfFile.h
src/fusion_sdk/file/TsvFile/SequentialClfFile.cpp
src/fusion_sdk/file/TsvFile/SequentialClfFile.h
src/fusion_sdk/file/TsvFile/SnpTable.cpp
src/fusion_sdk/file/TsvFile/SnpTable.h
src/fusion_sdk/file/TsvFile/SpfFile.cpp
src/fusion_sdk/file/TsvFile/SpfFile.h
src/fusion_sdk/file/TsvFile/TsvFile.cpp
src/fusion_sdk/file/TsvFile/TsvFile.h
src/fusion_sdk/file/TsvFile/TsvFileDiff.cpp
src/fusion_sdk/file/TsvFile/TsvFileDiff.h
src/fusion_sdk/file/TsvFile/TsvJoin.cpp
src/fusion_sdk/file/TsvFile/TsvJoin.h
src/fusion_sdk/file/TsvFile/apt-dump-pgf.cpp
src/fusion_sdk/file/TsvFile/apt-tsv-join.cpp
src/fusion_sdk/file/TsvFile/tsv-example.cpp
src/fusion_sdk/file/TsvFile/tsv-test.cpp
src/fusion_sdk/file/TsvFile/tsv-util.cpp
src/fusion_sdk/file/test-fileio.cpp
src/fusion_sdk/portability
src/fusion_sdk/portability/affy-base-types.h
src/fusion_sdk/portability/affy-system-api.h
src/fusion_sdk/portability/apt-no-warnings.h
src/fusion_sdk/portability/apt-win-dll.h
src/fusion_sdk/util
src/fusion_sdk/util/AffxArray.h
src/fusion_sdk/util/AffxBinaryFile.cpp
src/fusion_sdk/util/AffxBinaryFile.h
src/fusion_sdk/util/AffxByteArray.cpp
src/fusion_sdk/util/AffxByteArray.h
src/fusion_sdk/util/AffxConv.cpp
src/fusion_sdk/util/AffxConv.h
src/fusion_sdk/util/AffxMultiDimensionalArray.h
src/fusion_sdk/util/AffxSTL.h
src/fusion_sdk/util/AffxSplitArray.h
src/fusion_sdk/util/AffxStatistics.cpp
src/fusion_sdk/util/AffxStatistics.h
src/fusion_sdk/util/AffxString.cpp
src/fusion_sdk/util/AffxString.h
src/fusion_sdk/util/AffxTime.cpp
src/fusion_sdk/util/AffxTime.h
src/fusion_sdk/util/AptErrno.h
src/fusion_sdk/util/AptVersionInfo.h
src/fusion_sdk/util/BaseEngine.cpp
src/fusion_sdk/util/BaseEngine.h
src/fusion_sdk/util/CalvinChpCheck.h
src/fusion_sdk/util/CalvinToText.cpp
src/fusion_sdk/util/CalvinToText.h
src/fusion_sdk/util/CelCheck.h
src/fusion_sdk/util/ChpCheck.h
src/fusion_sdk/util/Convert.cpp
src/fusion_sdk/util/Convert.h
src/fusion_sdk/util/DotProgress.cpp
src/fusion_sdk/util/DotProgress.h
src/fusion_sdk/util/Engines.h
src/fusion_sdk/util/Err.cpp
src/fusion_sdk/util/Err.h
src/fusion_sdk/util/ErrHandler.h
src/fusion_sdk/util/Except.h
src/fusion_sdk/util/FrugalVector.h
src/fusion_sdk/util/Fs.cpp
src/fusion_sdk/util/Fs.h
src/fusion_sdk/util/FsPath.cpp
src/fusion_sdk/util/FsPath.h
src/fusion_sdk/util/Guid.cpp
src/fusion_sdk/util/Guid.h
src/fusion_sdk/util/LineFile.cpp
src/fusion_sdk/util/LineFile.h
src/fusion_sdk/util/LogStream.cpp
src/fusion_sdk/util/LogStream.h
src/fusion_sdk/util/MatrixCheck.h
src/fusion_sdk/util/MessageStream.h
src/fusion_sdk/util/MixedFileCheck.h
src/fusion_sdk/util/MsgHandler.h
src/fusion_sdk/util/MsgSocketHandler.cpp
src/fusion_sdk/util/MsgSocketHandler.h
src/fusion_sdk/util/MsgStream.cpp
src/fusion_sdk/util/MsgStream.h
src/fusion_sdk/util/Options.cpp
src/fusion_sdk/util/Options.h
src/fusion_sdk/util/OutputMessageStream.cpp
src/fusion_sdk/util/OutputMessageStream.h
src/fusion_sdk/util/PgOptions.cpp
src/fusion_sdk/util/PgOptions.h
src/fusion_sdk/util/Progress.h
src/fusion_sdk/util/ProgressDot.h
src/fusion_sdk/util/ProgressHandler.h
src/fusion_sdk/util/RowFile.cpp
src/fusion_sdk/util/RowFile.h
src/fusion_sdk/util/SQLite.cpp
src/fusion_sdk/util/SQLite.h
src/fusion_sdk/util/SocketBase.cpp
src/fusion_sdk/util/SocketBase.h
src/fusion_sdk/util/SocketClient.cpp
src/fusion_sdk/util/SocketClient.h
src/fusion_sdk/util/SocketEngine.cpp
src/fusion_sdk/util/SocketEngine.h
src/fusion_sdk/util/SocketHandler.cpp
src/fusion_sdk/util/SocketHandler.h
src/fusion_sdk/util/SocketServer.cpp
src/fusion_sdk/util/SocketServer.h
src/fusion_sdk/util/SocketTextHandler.cpp
src/fusion_sdk/util/SocketTextHandler.h
src/fusion_sdk/util/SocketUtil.cpp
src/fusion_sdk/util/SocketUtil.h
src/fusion_sdk/util/TableFile.cpp
src/fusion_sdk/util/TableFile.h
src/fusion_sdk/util/TextFileCheck.h
src/fusion_sdk/util/TmpFileFactory.cpp
src/fusion_sdk/util/TmpFileFactory.h
src/fusion_sdk/util/Util.cpp
src/fusion_sdk/util/Util.h
src/fusion_sdk/util/Verbose.cpp
src/fusion_sdk/util/Verbose.h
src/fusion_sdk/util/VerboseErrHandler.h
src/fusion_sdk/util/apt-check-calvinchp.cpp
src/fusion_sdk/util/apt-check-cel.cpp
src/fusion_sdk/util/apt-check-chp.cpp
src/fusion_sdk/util/apt-check-matrix.cpp
src/fusion_sdk/util/apt-check-mixedfile.cpp
src/fusion_sdk/util/apt-check-textfile.cpp
src/fusion_sdk/util/apt-engine-wrapper.cpp
src/fusion_sdk/util/apt-engine-wrapper.vcproj
src/fusion_sdk/util/chksum.cpp
src/fusion_sdk/util/chksum.h
src/fusion_sdk/util/dump-guid.cpp
src/fusion_sdk/util/md5.cpp
src/fusion_sdk/util/md5.h
src/fusion_sdk/util/md5sum.cpp
src/fusion_sdk/util/md5sum.h
src/fusion_sdk/util/test-md5sum.cpp
src/fusion_sdk/util/test-tmpfilefactory.cpp
src/fusion_sdk/util/util-meminfo.cpp
tests
tests/convertCel.R
tests/readCdfDataFrame.R
tests/readCdfQc.R
tests/readCdfUnitsWriteMap.R
tests/readCdfUnits_etal.R
tests/readCel.R
tests/readCelIntensities.R
tests/readCelRectangle.R
tests/readCelUnits.R
tests/readPgf.R
tests/testWriteAndReadEmptyCdf.R
tests/testWriteAndReadEmptyCel.R
tests/torture
tests/torture/tortureReadCdfUnits.R
tests/torture/tortureReadCel.R
tests/torture/tortureReadCelHeader.R
tests/torture/tortureReadCelUnits.R
tests/validate
tests/validate/validateCelFileFormats.R
affxparser documentation built on May 20, 2017, 10:09 p.m.

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