Function to join CDF allele A and allele B groups strand by strand.
function is design to be used with
on an Affymetrix Mapping (SNP) CDF
Allele A and allele B are merged into a
matrix where first row
hold the elements for allele A and the second elements for allele B.
list structure with the two groups
reverse, if the latter exists.
 Affymetrix, Understanding Genotyping Probe Set Structure, 2005.
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