bumphunter: Bump Hunter

Tools for finding bumps in genomic data

AuthorRafael A. Irizarry [cre, aut], Martin Aryee [aut], Kasper Daniel Hansen [aut], Hector Corrada Bravo [aut], Shan Andrews [ctb], Andrew E. Jaffe [ctb], Harris Jaffee [ctb], Leonardo Collado-Torres [ctb]
Date of publicationNone
MaintainerRafael A. Irizarry <rafa@jimmy.harvard.edu>
LicenseArtistic-2.0
Version1.14.0
https://github.com/ririzarr/bumphunter

View on Bioconductor

Files in this package

bumphunter/DESCRIPTION
bumphunter/NAMESPACE
bumphunter/R
bumphunter/R/AllGenerics.R bumphunter/R/bumphunter.R bumphunter/R/dummyData.R bumphunter/R/limmaForPermutations.R bumphunter/R/matchGenes.R bumphunter/R/regionFinder.R bumphunter/R/smooth.R bumphunter/R/utils.R
bumphunter/README.md
bumphunter/build
bumphunter/build/vignette.rds
bumphunter/data
bumphunter/data/TT.rda
bumphunter/data/datalist
bumphunter/inst
bumphunter/inst/CITATION
bumphunter/inst/NEWS.Rd
bumphunter/inst/doc
bumphunter/inst/doc/bumphunter.R
bumphunter/inst/doc/bumphunter.Rnw
bumphunter/inst/doc/bumphunter.pdf
bumphunter/inst/testData
bumphunter/inst/testData/testData.R
bumphunter/inst/testData/testData.Rout
bumphunter/inst/unitTests
bumphunter/inst/unitTests/bumpsTest1.rda
bumphunter/inst/unitTests/bumpsTest2.rda
bumphunter/inst/unitTests/loessSmoothed.rda
bumphunter/inst/unitTests/runmedSmoothed.rda
bumphunter/inst/unitTests/test_bumphunter.R
bumphunter/inst/unitTests/test_smoothers.R
bumphunter/man
bumphunter/man/TT.Rd bumphunter/man/annotateNearest.Rd bumphunter/man/annotateTranscripts.Rd bumphunter/man/bumphunter.Rd bumphunter/man/clusterMaker.Rd bumphunter/man/dummyData.Rd bumphunter/man/getSegments.Rd bumphunter/man/locfitByCluster.Rd bumphunter/man/loessByCluster.Rd bumphunter/man/matchGenes.Rd bumphunter/man/regionFinder.Rd bumphunter/man/runmedByCluster.Rd bumphunter/man/smoother.Rd
bumphunter/tests
bumphunter/tests/runTests.R
bumphunter/tests/test-all.R
bumphunter/tests/testthat
bumphunter/tests/testthat/test_annotation.R
bumphunter/vignettes
bumphunter/vignettes/bumphunter.Rnw
bumphunter/vignettes/bumphunter.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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