GenomicAlignments: Representation and manipulation of short genomic alignments

Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Package details

AuthorHervé Pagès, Valerie Obenchain, Martin Morgan
Bioconductor views Alignment Coverage DataImport Genetics ImmunoOncology Infrastructure RNASeq SNP Sequencing
MaintainerBioconductor Package Maintainer <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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GenomicAlignments documentation built on Nov. 8, 2020, 8:12 p.m.