stemangiola/tidySingleCellExperiment: Brings SingleCellExperiment to the Tidyverse
'tidySingleCellExperiment' is an adapter that abstracts the 'SingleCellExperiment' container in the form of a 'tibble'. This allows *tidy* data manipulation, nesting, and plotting. For example, a 'tidySingleCellExperiment' is directly compatible with functions from 'tidyverse' packages `dplyr` and `tidyr`, as well as plotting with `ggplot2` and `plotly`. In addition, the package provides various utility functions specific to single-cell omics data analysis (e.g., aggregation of cell-level data to pseudobulks).
Getting started
Browse package contents
Package details |
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| Bioconductor views | AssayDomain Clustering DifferentialExpression GeneExpression Infrastructure Normalization QualityControl RNASeq Sequencing SingleCell |
| Maintainer | |
| License | GPL-3 |
| Version | 1.13.3 |
| URL | https://github.com/stemangiola/tidySingleCellExperiment |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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