GenomicFiles: Distributed computing by file or by range

This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.

AuthorBioconductor Package Maintainer [aut, cre], Valerie Obenchain [aut], Michael Love [aut], Lori Shepherd [aut], Martin Morgan [aut]
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.10.3

View on Bioconductor

Files in this package

GenomicFiles/DESCRIPTION
GenomicFiles/NAMESPACE
GenomicFiles/NEWS
GenomicFiles/R
GenomicFiles/R/GenomicFiles-class.R GenomicFiles/R/VcfStack-class.R GenomicFiles/R/pack-methods.R GenomicFiles/R/reduceByFile-methods.R GenomicFiles/R/reduceByRange-methods.R GenomicFiles/R/reduceByYield.R GenomicFiles/R/reduceFiles.R GenomicFiles/R/reduceRanges.R GenomicFiles/R/registry.R GenomicFiles/R/unpack-methods.R GenomicFiles/R/zzz.R
GenomicFiles/README.md
GenomicFiles/build
GenomicFiles/build/vignette.rds
GenomicFiles/inst
GenomicFiles/inst/doc
GenomicFiles/inst/doc/GenomicFiles.R
GenomicFiles/inst/doc/GenomicFiles.Rnw
GenomicFiles/inst/doc/GenomicFiles.pdf
GenomicFiles/inst/extdata
GenomicFiles/inst/extdata/CEUtrio_11.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_11.vcf.bgz.tbi
GenomicFiles/inst/extdata/CEUtrio_20.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_20.vcf.bgz.tbi
GenomicFiles/inst/extdata/CEUtrio_21.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_21.vcf.bgz.tbi
GenomicFiles/inst/extdata/CEUtrio_22.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_22.vcf.bgz.tbi
GenomicFiles/inst/extdata/CEUtrio_7.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_7.vcf.bgz.tbi
GenomicFiles/inst/extdata/CEUtrio_X.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_X.vcf.bgz.tbi
GenomicFiles/inst/extdata/CEUtrio_Y.vcf.bgz
GenomicFiles/inst/extdata/CEUtrio_Y.vcf.bgz.tbi
GenomicFiles/inst/extdata/seqinfo.rds
GenomicFiles/inst/scripts
GenomicFiles/inst/scripts/methods-FileManager.R
GenomicFiles/inst/unitTests
GenomicFiles/inst/unitTests/test_GenomicFiles-class.R
GenomicFiles/inst/unitTests/test_VcfStack-class.R
GenomicFiles/inst/unitTests/test_pack-methods.R
GenomicFiles/inst/unitTests/test_reduceByFile-methods.R
GenomicFiles/inst/unitTests/test_reduceByRange-methods.R
GenomicFiles/man
GenomicFiles/man/GenomicFiles-class.Rd GenomicFiles/man/GenomicFiles-deprecated.Rd GenomicFiles/man/VcfStack-class.Rd GenomicFiles/man/pack-methods.Rd GenomicFiles/man/reduceByFile-methods.Rd GenomicFiles/man/reduceByRange-methods.Rd GenomicFiles/man/reduceByYield.Rd GenomicFiles/man/registry-utils.Rd GenomicFiles/man/unpack-methods.Rd
GenomicFiles/tests
GenomicFiles/tests/GenomicFiles_unit_tests.R
GenomicFiles/vignettes
GenomicFiles/vignettes/GenomicFiles.Rnw
GenomicFiles/vignettes/reduceByFile_flow.png
GenomicFiles/vignettes/reduceByRange_flow.png

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