panp: Presence-Absence Calls from Negative Strand Matching Probesets
Version 1.46.0

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

Package details

AuthorPeter Warren
Bioconductor views Infrastructure
MaintainerPeter Warren <[email protected]>
LicenseGPL (>= 2)
Version1.46.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("panp")

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panp documentation built on May 31, 2017, 2:29 p.m.