biocViews: Categorized views of R package repositories

structures for vocabularies and narratives of views

AuthorVJ Carey <stvjc@channing.harvard.edu>, BJ Harshfield <rebjh@channing.harvard.edu>, S Falcon <sfalcon@fhcrc.org> , Sonali Arora
Date of publicationNone
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0
Version1.42.0
http://www.bioconductor.org/packages/release/BiocViews.html

View on Bioconductor

Man pages

BiocView-class: Class "BiocView"

biocViews-package: Categorized views of R package repositories

biocViewsVocab: Bioconductor Task Views Vocabulary Data

extractManuals: Extract Rd man pages and build pdf reference manuals from...

extractNEWS: Extract NEWS files from source package tarballs

extractTopLevelFiles: Extract files from the top level of source package tarballs

extractVignettes: Extract pdf vignettes from local package repository

genReposControlFiles: Generate CRAN-style repository control files

getBiocSubViews: Build a list of BiocView objects from a package repository

getBiocViews: Build a list of BiocView objects from a package repository

getCurrentbiocViews: Get a list of biocViews for each branch

getPackageNEWS: Retrieve and print package NEWS

getPacksAndViews: Parse VIEWS file for views and packages

getSubTerms: Retrieve a term and its children from a vocab DAG

htmlDoc: Create a complete HTML document representation of an object

htmlFilename: Return a filename for an object's HTML representation

Htmlized-class: Class "Htmlized"

htmlValue: HTML Representation of an Object

PackageDetail-class: Class "PackageDetail"

recommendBiocViews: Recommend biocViews for an existing Package.

recommendPackages: Recommend Packages using existing biocViews.

RepositoryDetail-class: Class "RepositoryDetail"

validation_tests: Validate a package's biocViews.

writeBiocViews: Write a list of BiocView objects to HTML

writeHtmlDoc: Write an XML DOM containing HTML to a file

writePackageDetailHtml: Write HTML files for packages in a CRAN-style repository

write_REPOSITORY: Write a REPOSITORY control file for a CRAN-style package...

writeRepositoryHtml: Write package descriptions and a repository index as HTML

writeRFilesFromVignettes: Write R files from vignettes

write_SYMBOLS: Write a SYMBOLS file

writeTopLevelView: Write the view for the root of a vocabulary to disk

write_VIEWS: Write a VIEWS control file for a CRAN-style package...

Files in this package

biocViews/DESCRIPTION
biocViews/NAMESPACE
biocViews/NEWS
biocViews/R
biocViews/R/AllClasses.R biocViews/R/AllGenerics.R biocViews/R/as-methods.R biocViews/R/getPackNames.R biocViews/R/getPackageNEWS.R biocViews/R/htmlDoc-methods.R biocViews/R/htmlFilename-methods.R biocViews/R/htmlValue-methods.R biocViews/R/packageDetails.R biocViews/R/pump.R biocViews/R/recommendBiocViews.R biocViews/R/repository.R biocViews/R/show-methods.R biocViews/R/showvoc.R biocViews/R/validation_tests.R
biocViews/build
biocViews/build/vignette.rds
biocViews/data
biocViews/data/biocViewsVocab.rda
biocViews/inst
biocViews/inst/css
biocViews/inst/css/package-detail.css.in
biocViews/inst/css/repository-detail.css.in
biocViews/inst/doc
biocViews/inst/doc/HOWTO-BCV.R
biocViews/inst/doc/HOWTO-BCV.Rnw
biocViews/inst/doc/HOWTO-BCV.pdf
biocViews/inst/doc/VIEWS
biocViews/inst/doc/createReposHtml.R
biocViews/inst/doc/createReposHtml.Rnw
biocViews/inst/doc/createReposHtml.pdf
biocViews/inst/dot
biocViews/inst/dot/biocViewsVocab.dot
biocViews/inst/extdata
biocViews/inst/extdata/biocViewsVocab.sqlite
biocViews/inst/htmlfrags
biocViews/inst/htmlfrags/topfrag.html
biocViews/inst/script
biocViews/inst/script/recommend_biocViews_rpacks.R
biocViews/inst/script/reviseBiocViews.R
biocViews/inst/script/revise_expt_biocViews.R
biocViews/inst/script/revisebiocViews2014.R
biocViews/inst/unitTests
biocViews/inst/unitTests/CITATION
biocViews/inst/unitTests/test_biocViews.R
biocViews/inst/unitTests/test_citations.R
biocViews/man
biocViews/man/BiocView-class.Rd biocViews/man/Htmlized-class.Rd biocViews/man/PackageDetail-class.Rd biocViews/man/RepositoryDetail-class.Rd biocViews/man/biocViews-package.Rd biocViews/man/biocViewsVocab.Rd biocViews/man/extractManuals.Rd biocViews/man/extractNEWS.Rd biocViews/man/extractTopLevelFiles.Rd biocViews/man/extractVignettes.Rd biocViews/man/genReposControlFiles.Rd biocViews/man/getBiocSubViews.Rd biocViews/man/getBiocViews.Rd biocViews/man/getCurrentbiocViews.Rd biocViews/man/getPackageNEWS.Rd biocViews/man/getPacksAndViews.Rd biocViews/man/getSubTerms.Rd biocViews/man/htmlDoc.Rd biocViews/man/htmlFilename.Rd biocViews/man/htmlValue.Rd biocViews/man/recommendBiocViews.Rd biocViews/man/recommendPackages.Rd biocViews/man/validation_tests.Rd biocViews/man/writeBiocViews.Rd biocViews/man/writeHtmlDoc.Rd biocViews/man/writePackageDetailHtml.Rd biocViews/man/writeRFilesFromVignettes.Rd biocViews/man/writeRepositoryHtml.Rd biocViews/man/writeTopLevelView.Rd biocViews/man/write_REPOSITORY.Rd biocViews/man/write_SYMBOLS.Rd biocViews/man/write_VIEWS.Rd
biocViews/tests
biocViews/tests/runTests.R
biocViews/updateVocab.sh
biocViews/vignettes
biocViews/vignettes/HOWTO-BCV.Rnw
biocViews/vignettes/createReposHtml.Rnw

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