biocViews: Categorized views of R package repositories

Share:

structures for vocabularies and narratives of views

Author
VJ Carey <stvjc@channing.harvard.edu>, BJ Harshfield <rebjh@channing.harvard.edu>, S Falcon <sfalcon@fhcrc.org> , Sonali Arora
Date of publication
None
Maintainer
Bioconductor Package Maintainer <maintainer@bioconductor.org>
License
Artistic-2.0
Version
1.42.0
URLs

View on Bioconductor

Man pages

BiocView-class
Class "BiocView"
biocViews-package
Categorized views of R package repositories
biocViewsVocab
Bioconductor Task Views Vocabulary Data
extractManuals
Extract Rd man pages and build pdf reference manuals from...
extractNEWS
Extract NEWS files from source package tarballs
extractTopLevelFiles
Extract files from the top level of source package tarballs
extractVignettes
Extract pdf vignettes from local package repository
genReposControlFiles
Generate CRAN-style repository control files
getBiocSubViews
Build a list of BiocView objects from a package repository
getBiocViews
Build a list of BiocView objects from a package repository
getCurrentbiocViews
Get a list of biocViews for each branch
getPackageNEWS
Retrieve and print package NEWS
getPacksAndViews
Parse VIEWS file for views and packages
getSubTerms
Retrieve a term and its children from a vocab DAG
htmlDoc
Create a complete HTML document representation of an object
htmlFilename
Return a filename for an object's HTML representation
Htmlized-class
Class "Htmlized"
htmlValue
HTML Representation of an Object
PackageDetail-class
Class "PackageDetail"
recommendBiocViews
Recommend biocViews for an existing Package.
recommendPackages
Recommend Packages using existing biocViews.
RepositoryDetail-class
Class "RepositoryDetail"
validation_tests
Validate a package's biocViews.
writeBiocViews
Write a list of BiocView objects to HTML
writeHtmlDoc
Write an XML DOM containing HTML to a file
writePackageDetailHtml
Write HTML files for packages in a CRAN-style repository
write_REPOSITORY
Write a REPOSITORY control file for a CRAN-style package...
writeRepositoryHtml
Write package descriptions and a repository index as HTML
writeRFilesFromVignettes
Write R files from vignettes
write_SYMBOLS
Write a SYMBOLS file
writeTopLevelView
Write the view for the root of a vocabulary to disk
write_VIEWS
Write a VIEWS control file for a CRAN-style package...

Files in this package

biocViews/DESCRIPTION
biocViews/NAMESPACE
biocViews/NEWS
biocViews/R
biocViews/R/AllClasses.R
biocViews/R/AllGenerics.R
biocViews/R/as-methods.R
biocViews/R/getPackNames.R
biocViews/R/getPackageNEWS.R
biocViews/R/htmlDoc-methods.R
biocViews/R/htmlFilename-methods.R
biocViews/R/htmlValue-methods.R
biocViews/R/packageDetails.R
biocViews/R/pump.R
biocViews/R/recommendBiocViews.R
biocViews/R/repository.R
biocViews/R/show-methods.R
biocViews/R/showvoc.R
biocViews/R/validation_tests.R
biocViews/build
biocViews/build/vignette.rds
biocViews/data
biocViews/data/biocViewsVocab.rda
biocViews/inst
biocViews/inst/css
biocViews/inst/css/package-detail.css.in
biocViews/inst/css/repository-detail.css.in
biocViews/inst/doc
biocViews/inst/doc/HOWTO-BCV.R
biocViews/inst/doc/HOWTO-BCV.Rnw
biocViews/inst/doc/HOWTO-BCV.pdf
biocViews/inst/doc/VIEWS
biocViews/inst/doc/createReposHtml.R
biocViews/inst/doc/createReposHtml.Rnw
biocViews/inst/doc/createReposHtml.pdf
biocViews/inst/dot
biocViews/inst/dot/biocViewsVocab.dot
biocViews/inst/extdata
biocViews/inst/extdata/biocViewsVocab.sqlite
biocViews/inst/htmlfrags
biocViews/inst/htmlfrags/topfrag.html
biocViews/inst/script
biocViews/inst/script/recommend_biocViews_rpacks.R
biocViews/inst/script/reviseBiocViews.R
biocViews/inst/script/revise_expt_biocViews.R
biocViews/inst/script/revisebiocViews2014.R
biocViews/inst/unitTests
biocViews/inst/unitTests/CITATION
biocViews/inst/unitTests/test_biocViews.R
biocViews/inst/unitTests/test_citations.R
biocViews/man
biocViews/man/BiocView-class.Rd
biocViews/man/Htmlized-class.Rd
biocViews/man/PackageDetail-class.Rd
biocViews/man/RepositoryDetail-class.Rd
biocViews/man/biocViews-package.Rd
biocViews/man/biocViewsVocab.Rd
biocViews/man/extractManuals.Rd
biocViews/man/extractNEWS.Rd
biocViews/man/extractTopLevelFiles.Rd
biocViews/man/extractVignettes.Rd
biocViews/man/genReposControlFiles.Rd
biocViews/man/getBiocSubViews.Rd
biocViews/man/getBiocViews.Rd
biocViews/man/getCurrentbiocViews.Rd
biocViews/man/getPackageNEWS.Rd
biocViews/man/getPacksAndViews.Rd
biocViews/man/getSubTerms.Rd
biocViews/man/htmlDoc.Rd
biocViews/man/htmlFilename.Rd
biocViews/man/htmlValue.Rd
biocViews/man/recommendBiocViews.Rd
biocViews/man/recommendPackages.Rd
biocViews/man/validation_tests.Rd
biocViews/man/writeBiocViews.Rd
biocViews/man/writeHtmlDoc.Rd
biocViews/man/writePackageDetailHtml.Rd
biocViews/man/writeRFilesFromVignettes.Rd
biocViews/man/writeRepositoryHtml.Rd
biocViews/man/writeTopLevelView.Rd
biocViews/man/write_REPOSITORY.Rd
biocViews/man/write_SYMBOLS.Rd
biocViews/man/write_VIEWS.Rd
biocViews/tests
biocViews/tests/runTests.R
biocViews/updateVocab.sh
biocViews/vignettes
biocViews/vignettes/HOWTO-BCV.Rnw
biocViews/vignettes/createReposHtml.Rnw